Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme395408g00001 ACTACCACTGGTTGGTTCCCCGGTAATAACAACGAGGTGAACAATGTCGATGTAGCCGTGAAGATAGAAGATCAAGGTCAAAGTAGTGGTACTTTGGAGGCGCGTGTGATTCACGCGCAAACGAATAGTAAAAGTTTAGGCTACCGAGGAGTGAGAAGGAGGCCTTGGGGGAAATATGCTGCCGAGATAAGGGATTCTAAGAGAAATGGCGCGAGAGTGTGGCTTGGGACTTATGAAACAGCTAAGAATGCAGCTTTGGCTTATGATCGAGCTGCGTTTAAATTACGCGGCTCGAAAGCCAAGCTGA 307 0.4788 TTTGWFPGNNNEVNNVDVAVKIEDQGQSSGTLEARVIHAQTNSKSLGYRGVRRRPWGKYAAEIRDSKRNGARVWLGTYETAKNAALAYDRAAFKLRGSKAKL 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme395408g00001 102 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
Trme395408g00001 102 CDD AP2 48 102 IPR001471 GO:0003700|GO:0006355
Trme395408g00001 102 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Trme395408g00001 102 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Trme395408g00001 102 SMART rav1_2 47 102 IPR001471 GO:0003700|GO:0006355
Trme395408g00001 102 PANTHER DNA-BINDING DOMAIN 36 102 IPR044808 GO:0003700|GO:0009873
Trme395408g00001 102 SUPERFAMILY DNA-binding domain 47 101 IPR016177 GO:0003677
Trme395408g00001 102 Gene3D AP2/ERF domain 47 102 IPR036955 GO:0003700|GO:0006355
Trme395408g00001 102 ProSiteProfiles AP2/ERF domain profile. 47 102 IPR001471 GO:0003700|GO:0006355
Trme395408g00001 102 FunFam Ethylene-responsive transcription factor 2 46 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme395408g00001 Trme-Chr395408 1 307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme395408g00001 44 102 AP2-EREBP Transcription Factor Family AT2G44840 81.356 4.76e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme395408g00001 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme395408g00001 K09286 - gmx:100793366 147.902