Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39428g00001 ATGAGGAAGAGACAAGTAGTTGTGAGAAGATCAGAAGATTCATCACAAAGAAGTGTTGTGAAATATGGAGAGTGTCAGAAGAATCATGCAGCTAATGTTGGAGGTTATGCTGTTGATGGTTGTAGAGAGTTTATGGCAAGTGGTGAAGAAGGTACAAATGGTGCTCTCACTTGTGCTGCTTGTGGTTGTCACAGAAACTTTCACAAAAGAGAGTTAGTTGAAACTGAAACTGTTTCTGAGTGTTCAAATGGTACTTGA 258 0.3953 MRKRQVVVRRSEDSSQRSVVKYGECQKNHAANVGGYAVDGCREFMASGEEGTNGALTCAACGCHRNFHKRELVETETVSECSNGT 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39428g00001 85 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 74 - -
Trme39428g00001 85 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 71 IPR006456 -
Trme39428g00001 85 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
Trme39428g00001 85 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39428g00001 Trme-Chr39428 571 828 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39428g00001 1 83 Zinc finger-homeobox gene family AT3G28917 63.158 3.36e-34 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trme39428g00001 ZF-HD_dimer 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39428g00001 - - aprc:113868039 140.198