Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39419g00001 GGTTTCAGTTTTGAGGGCCGTAGCTTCCTCGAAAATGTTAATGATATTTGGAAACAGAAAGATGGCCAAGTTTCTCTACAGAAAAAACTTGTTTCAGACATCTACACAAGAAATCAACTGGGAGATAGAGATACAGTTGTATTTGGAGAAATGGCATTTTATAAAAGACTTCCTCGTAAGAAGATATTTCTTGTACTTGACAATGTGAGTGAATTGGAACAGTTCAATACTTTGTATGGTAGTTGTTGTGAATGCTTTGGTCACGGAAGTAGAATAATTATCACAACAAGAGATAGACATTTACTTCATTACCTTCCAGTTGACCATGTATACAAAATGAAATATATGGACATTGCTGAATCTCTTGAACTGTTTAGTTGGCATGCATTCAAATTTCCAAGTCCTATAGAAAGTTATGCCGAACTTTGTAGAGATGTTGTTGAGTATTGTGGGGGACTGCCGCTAGCTATTAAACTCATTGGGTCTTTTTTGTTTGATAGATCTGGAGTGGAGTCGAAGTTTGTACTGGAAAAGCTCAAAATTCCCACCGATATGATAATGAGAAATCTAAGAACAGACTTTGATGATTTAGATGATGATGAGAAAAAAATATTCCTTGATGTAGCTACTTTATTTATTGGGATGGACAGAGATGATTTAATTCAGGCATTACAATACTCTGTGGAGTACCTGGAAGTTGGAATAACAATACTTGAACAGAAAAACCTTATAACTATAGATAGCAAGAACAAGATTGGAATGCATAGTTTGGTACGAGCAATGGGGAGAGAAATCAAAAGGGAACATGGTATAGCTGAGGTGAGTAGTATGATTTGA 837 0.3572 GFSFEGRSFLENVNDIWKQKDGQVSLQKKLVSDIYTRNQLGDRDTVVFGEMAFYKRLPRKKIFLVLDNVSELEQFNTLYGSCCECFGHGSRIIITTRDRHLLHYLPVDHVYKMKYMDIAESLELFSWHAFKFPSPIESYAELCRDVVEYCGGLPLAIKLIGSFLFDRSGVESKFVLEKLKIPTDMIMRNLRTDFDDLDDDEKKIFLDVATLFIGMDRDDLIQALQYSVEYLEVGITILEQKNLITIDSKNKIGMHSLVRAMGREIKREHGIAEVSSMI 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39419g00001 278 Pfam NB-ARC domain 20 171 IPR002182 GO:0043531
Trme39419g00001 278 Gene3D - 2 109 IPR027417 -
Trme39419g00001 278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 207 IPR027417 -
Trme39419g00001 278 PRINTS Disease resistance protein signature 56 70 - -
Trme39419g00001 278 PRINTS Disease resistance protein signature 150 164 - -
Trme39419g00001 278 SUPERFAMILY "Winged helix" DNA-binding domain 186 268 IPR036390 -
Trme39419g00001 278 Gene3D - 116 198 IPR042197 -
Trme39419g00001 278 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 267 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39419g00001 Trme-Chr39419 1 837 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39419g00001 56 265 WRKY Transcription Factor Family AT5G45050 33.019 2.87e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39419g00001 - - tpra:123891787 263.077