Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme393g00001 GCATTCTTCAAGAAGGCAATTGATGACATGGCTGCTCAGAGCTTGCGTTGTGTTGCTATTGCATACAGATCATATGAATTGGACAAAATTCCATCTAAGGAGGAGGATTTAGACCAGTGGACCTTACCCGAACACGAGCTTGTTTTGGTTGCTATTGTTGGAATAAAGGATCCTTGCCGCCCTGGAGTCAAAGAAGCTGTGAGATTATGTACTGAGGCTGGTGTTAAGGTACGCATGGTTACTGGGGACAATCCTCAAACAGCAAAAGCAATAGCTTTGGAGTGCGGAATACTGGTTTCAACTGAAGATGCAGTTGAGCCAAATGTAATTGAAGGAAAGACATTCCGTCAATTCTCTGAAAAGGAAAGGGAAGAAGTTGCTAAGAAAATAACTGTGATGGGAAGATCATCTCCAAATGACAAGCTTTTGCTTGTGCAAGCACTACGTAAAGGAGGTGAAGTTGTTGCTGTCACAGGAGATGGAACTAATGATGCCCCTGCTCTTCATGAGGCAGATATTGGTCTTTCTATGGGTATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCGGATATTATAATCTTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGCTGGGGTCGTTCTGTTTATGCAAATATTCAGAAATTTATTCAGTTCCAACTCACTGTAAATGTTGCTGCTCTTGTTATAAATGTTGTGGCAGCGGTATCTTCTGGTGAGGTTCCTTTAAATGCAGTACAGCTTCTGTGGGTTAACCTTATTATGGACACACTTGGGGCTCTTGCTCTGGCTACCGAGCCACCGACTGACAGCCTTATGCACAGATCACCAGTTGGCCGAAGGTTTGGATTGATTGGCTTCCTCACTATGTTTGCAGCTTAA 888 0.4313 AFFKKAIDDMAAQSLRCVAIAYRSYELDKIPSKEEDLDQWTLPEHELVLVAIVGIKDPCRPGVKEAVRLCTEAGVKVRMVTGDNPQTAKAIALECGILVSTEDAVEPNVIEGKTFRQFSEKEREEVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGEVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRSPVGRRFGLIGFLTMFAA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme393g00001 295 FunFam Calcium-transporting ATPase 50 203 - -
Trme393g00001 295 SUPERFAMILY HAD-like 3 263 IPR036412 -
Trme393g00001 295 PRINTS P-type cation-transporting ATPase superfamily signature 182 194 - -
Trme393g00001 295 PRINTS P-type cation-transporting ATPase superfamily signature 51 62 - -
Trme393g00001 295 PRINTS P-type cation-transporting ATPase superfamily signature 73 83 - -
Trme393g00001 295 PRINTS P-type cation-transporting ATPase superfamily signature 158 177 - -
Trme393g00001 295 Gene3D - 168 294 - -
Trme393g00001 295 Pfam haloacid dehalogenase-like hydrolase 48 172 - -
Trme393g00001 295 Pfam Cation transporting ATPase, C-terminus 243 287 IPR006068 -
Trme393g00001 295 Gene3D - 1 60 IPR023299 GO:0000166
Trme393g00001 295 PANTHER CATION TRANSPORTING ATPASE 3 287 - -
Trme393g00001 295 NCBIfam HAD-IC family P-type ATPase 124 239 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme393g00001 Trme-Chr393 173 4340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme393g00001 2 287 Primary Pumps ATPases AT3G21180 84.615 4.47e-170 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme393g00001 K01537 - gmx:100817367 506.908