Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39385g00001 ATTATTATGGTCCTCAACATGGAATCCATAATACCTGATTGTGAGATCATTGGTAATCCAAAGTCATTTGTGGATTCAGAATTACCTGTTCAGAAAGCATTGTGTGATAACACTGTGCAGAGTTCGTCCAGTGGTAATAATAATAATTTGGCTGCTCAAAATAGAGGTAGTAATGTGCAGAATTTCAGGCCAACAGTTCAACCTGCATACAAACCTCCTCCGGTTTACAAAGGCCGCGGTGCAGTTGTAAAAAACGAAGCGCCGGCACATGTAATACCAATAGCCGCTTTAAATCCATATCAAGGTAGGTGGGCCATCAAGGCAAGGGTTACTGCTAAAGGGGATTTGCGCCGCTATAACAATGCTCGTGGAGATGGAAAAGTCTTCTCGTTCGATCTCCTTGATTCTGATGGAGGTGAAATCCGTGTAACATGTTTTAATGCTATTGTTGACCGCTTCTATGATGCAATTGAG 474 0.4219 IIMVLNMESIIPDCEIIGNPKSFVDSELPVQKALCDNTVQSSSSGNNNNLAAQNRGSNVQNFRPTVQPAYKPPPVYKGRGAVVKNEAPAHVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAIVDRFYDAIE 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39385g00001 158 CDD RPA1_DBD_A 93 158 - -
Trme39385g00001 158 FunFam Replication protein A subunit 90 158 - -
Trme39385g00001 158 SUPERFAMILY Nucleic acid-binding proteins 90 157 IPR012340 -
Trme39385g00001 158 Gene3D - 89 158 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39385g00001 Trme-Chr39385 557 1030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39385g00001 1 158 Core DNA Replication Machinery Family AT2G06510 57.803 1.85e-62 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39385g00001 K07466 - cave:132165585 244.202