Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme393632g00001 AAGGATGGCAGTGGCCAATTTAAGACGGTCACTGACAGCATCAACTCATATCCTACGAATTACCAAGGTAGATACATTATCTACGTCAAGGCCGGCATCTACAAAGAGTACATAACCGTTGATGAGAGAAAACCTAACATTCTCTTGTATGGTGATGGTCCTACCAACACCATCATCACTGGAAGCAAAAACCGCAATCAAGGACTGCAAATGTCACAAACCGCCACGTTCAGTAAGTTAACTGTTAATTATCCCTAG 258 0.4264 KDGSGQFKTVTDSINSYPTNYQGRYIIYVKAGIYKEYITVDERKPNILLYGDGPTNTIITGSKNRNQGLQMSQTATFSKLTVNYP 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme393632g00001 85 PANTHER PECTINESTERASE 1 78 - -
Trme393632g00001 85 Pfam Pectinesterase 1 79 IPR000070 GO:0030599|GO:0042545
Trme393632g00001 85 Gene3D - 1 84 IPR012334 -
Trme393632g00001 85 SUPERFAMILY Pectin lyase-like 1 78 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme393632g00001 Trme-Chr393632 2 259 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme393632g00001 1 77 Carbohydrate Esterase AT2G26450 51.948 2.02e-23 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme393632g00001 K01051 - gmx:100820142 127.102