Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39338g00001 ATGGCTGATAAGAAGACAATTGCAATTTGTCAGTCAGGAGGCAAATTTGAAACTGCAAATGATGGTACTTTGTTATATAAAGGTGGTGATGCTCATGCTATGGATATTGATGATCAAATGAAATTTATAGACTTTAAGGCTGAGATAGCAGAAATGTTTAGTTTTAATGTTAGTAACATTGCTATCAAGTATTTTCTTCCTGGTAACAAGACTACTCTCATTTCAATTTCCAATGATAAGGATCTACAACGAATGGTTAAGTTTCATCGTGATTCGAGTACCGTTGAAATCTATATCTTTATTGAAGAGCCACTTGCACTTGAGGTCTCAACCATGCCTGCCAGTAGGTCGAGTAGAACAACTTTGTCTGAAACAGTGTTGCCGATTAAT 390 0.359 MADKKTIAICQSGGKFETANDGTLLYKGGDAHAMDIDDQMKFIDFKAEIAEMFSFNVSNIAIKYFLPGNKTTLISISNDKDLQRMVKFHRDSSTVEIYIFIEEPLALEVSTMPASRSSRTTLSETVLPIN 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39338g00001 130 Gene3D - 25 102 - -
Trme39338g00001 130 SUPERFAMILY CAD & PB1 domains 20 100 - -
Trme39338g00001 130 SMART PB1_new 19 104 IPR000270 GO:0005515
Trme39338g00001 130 Pfam PB1 domain 26 100 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39338g00001 Trme-Chr39338 1 479 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39338g00001 5 87 MAP Kinase Kinase Kinase AT1G79570 30.588 8.56e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39338g00001 K17604 - csv:101203656 190.66