Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39336g00001 GAGGCTATTGCTGGAAGACCTGAATGGTTTGGTCTTGGCAGTAGAGTCATCATCACAACTCGGGACAAAAGCTTGCTAACACGTCATGGGGTTGAACTTACATATGAGGTGAAGGGGTTGGATGACGAAGATGCTTTTGAATTTGTTCGATGGAAAGCTTTAAAGACTGACGAACTGTTTTCAGGTTATGTGCATGTTTTAGAACGTGTTGTAGCATATGCTTCTGGCCTTCCACTCGGTTTGGAAGTCATGGGTTCTCACCTCTTTAATAAGACAATAGAACAATGTAAAGATGCACTAGATCGTTACGAAAGGATTCCTGATAAAAAGATCCAAACGGTACTACAGCTGAGCTTTGATACTTTGGAGGTAGAAGAGAAGTCTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATAAATTGACAAGAGTCGAACAAATACTTCATGTTCATTATGGTGATATCATGAAAGATCACATTAATGTGTTAGTGGAAAAATCTCTCATAAAAATAAATGAGTCAGGTCAGGTGACATTACATGATTTGGTAGAGGATATGGGGAAAGAAATTGTTAGACAAGAATCACCTGAAGATCCTGGAAAACGCAGTAGGTTATGGGCCTCTAAAGATATAATTGAAGTTTTAAAAGAAAATAAG 660 0.3818 EAIAGRPEWFGLGSRVIITTRDKSLLTRHGVELTYEVKGLDDEDAFEFVRWKALKTDELFSGYVHVLERVVAYASGLPLGLEVMGSHLFNKTIEQCKDALDRYERIPDKKIQTVLQLSFDTLEVEEKSVFLDIACCFKGYKLTRVEQILHVHYGDIMKDHINVLVEKSLIKINESGQVTLHDLVEDMGKEIVRQESPEDPGKRSRLWASKDIIEVLKENK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39336g00001 220 Pfam NB-ARC domain 12 104 IPR002182 GO:0043531
Trme39336g00001 220 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 215 IPR044974 GO:0006952
Trme39336g00001 220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 133 IPR027417 -
Trme39336g00001 220 SUPERFAMILY "Winged helix" DNA-binding domain 109 217 IPR036390 -
Trme39336g00001 220 Gene3D - 39 123 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39336g00001 Trme-Chr39336 397 1056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39336g00001 1 218 WRKY Transcription Factor Family AT5G45050 35.000 1.28e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39336g00001 - - tpra:123905727 362.459