Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39327g00001 ATGGCGTCTGATCTAAATTCAGGGTTGTCAAAGAAAACATTTGTTTTCGGATTGAAAGTTTGGGTATTAATGGGAATTATTGTTGGTTTGTTCATTATAATCATTCTTGCGGTGCTATCAATATGTCTTACTTTAAGAAAGAAATCGAGAAGAGGCAACGGTGGCATGCGTCCTCTTAGTCATATTCTCTCTATTTCAGAAGAGATCAAAGAAATTAGTGTCGATCAAGTTTCATCGAATAATCAACCGCAAAATGGTTCTTTCATGAGCTTGAATGACAAGTTTAGTGATGGCGATTCCGGAAAGGTTTTGATCCAAACAAAGAATGGAGATAATAGTAGTCAATCAGGTTCTTTTAATCGTTTAGAGAAAGATCCGAATGGTTCTCAGTCAGGTGAAGATAGCGGCGGTTTTAGGAGTATTTCGGCTTATAGGTCTTCGTCGCATCCTATATCTGCGCCGTCGCCGTGTTCTGGTCTTCCTGAATTCTCTCACCTTGGCTGGGGTCACTGGTTTACACTAAGGGACTTGGAACTTGCAACAAATAGGTTTTCGAAGGATAATATTATCGGCGAAGGTGGATATGGAGTTGTCTATCGAGGTCAACTTATCAACGGGAATCCTGTTGCCGTTAAGAAGCTCCTCAATAATTTAGGACAAGCTGAAAAGGAATTTAGGGTGGAAGTTGAGGCTATTGGTCATGTGCGGCATAAGAACTTAGTTCGACTTTTAGGCTTTTGCATTGAAGGAACTCACAGGTAG 762 0.4055 MASDLNSGLSKKTFVFGLKVWVLMGIIVGLFIIIILAVLSICLTLRKKSRRGNGGMRPLSHILSISEEIKEISVDQVSSNNQPQNGSFMSLNDKFSDGDSGKVLIQTKNGDNSSQSGSFNRLEKDPNGSQSGEDSGGFRSISAYRSSSHPISAPSPCSGLPEFSHLGWGHWFTLRDLELATNRFSKDNIIGEGGYGVVYRGQLINGNPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGFCIEGTHR 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39327g00001 253 ProSiteProfiles Protein kinase domain profile. 184 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme39327g00001 253 Pfam Protein tyrosine and serine/threonine kinase 187 250 IPR001245 GO:0004672|GO:0006468
Trme39327g00001 253 ProSitePatterns Protein kinases ATP-binding region signature. 190 213 IPR017441 GO:0005524
Trme39327g00001 253 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 163 253 - -
Trme39327g00001 253 MobiDBLite consensus disorder prediction 102 145 - -
Trme39327g00001 253 Gene3D Phosphorylase Kinase; domain 1 165 253 - -
Trme39327g00001 253 SUPERFAMILY Protein kinase-like (PK-like) 159 251 IPR011009 -
Trme39327g00001 253 PANTHER OS01G0323000 PROTEIN 4 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39327g00001 Trme-Chr39327 27 941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39327g00001 158 253 Trihelix Transcription Factor Family AT1G23540 46.392 1.90e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme39327g00001 PK_Tyr_Ser-Thr 1e-08 CL0016