Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3929g00001 ATGAGAGAGAAAGGTAGAGAGAGAAGGAGCGGAGGAGGTAGGGAGCAGGAGTTATCAAACGACACCAAAAAACACTCTAATTTCAACCCAGATTTTGCTGGTTACCACCACAATAAACAGATTACAACATTCTTTGTTACAAATTTTCCAGAAGATGTTACAACAGATGATCTATGGACTACTTTTGCAAGGTATTGGAAGGTTGGGGAAGTGTACATACCAAAGAAAAGAGATAAGTTTGATCGCAGGTTCGGCTTTGCGCGATTTGTAGAGGTACGAGATGCTCAGAAATTGCTTGAGAGGATTGAAGGCACGTGGATCGGAACTTACAAATTGAGAGCAAACCTTTCAAGATTCAACAGAGGGGAGCTCCAACATAGAGATGATTCACATCTTAAAAGCAAAGTGGAGAGCAGGGTTGGGGGAAGACTTGTGGACTTGACCAACATCTATCTTTCAAAGGAGCTTTGGGGGTGGGAGCTGGGTGTGGTCAACGTGGAGCCTATCCCAGCAGCTCTCGAGAGGCTGAAACATAGTTTCGTTGGGGTTCTTAGGGACGAAAACTTGGCTGATAACATCCATGTGTTGATCGCAATGGAAGGCTTTCAAGATGTTAAAGCTACCTTGTTGGGTTTTGACAAAATCCTTTTGTCCAGTAGTTTGGAAGATGGAGTGTTGAACGCTATTCAAGCAGATAAAGCTTGGTGGAATAGCAAATTTCTGGAGATCAATAAGTGGAGTTTGGATCTTAAGGCTTCAGGGAGGCGCATCTGGGTTAGAATCTTTGGCACACCTCCTCATGTTTGGGGGTGGGAGTGTTTCAATAGAATTCTTAACAGGTTTGGAAGATTGTCTGGTCTTGATGCTAGTACAGACAAACAATCAAGGCTAGATGTTGCAAGGGCACAAGTTGTTGTCTCATCCTGGGATTTTTTGGATGAATCGGTGGAGATCCTGGTGGGGAAAGATCGATTCGTTATAAGGGTGGTGGAGGAGAGGTTTGGGGATATCGATTTGGGAGTGAAGAGGTGTATGGATCCAGATCTTTTTTGCGTTGGTTCTTTGGCGGATGAAGCTGCTTCGCGTTCTCCGTCAGAAGCTGGCGATTGCTTGGTGAATGACGATGGTAAACACGACGGAGAAGAGCGCAGAGAGTGGATCGAAGGGTGGTCAGAGCAAGGGTCCGACGAGGATCTCGGTGTTGGTTTTTACCCAACAGTTCTTGGTACTGCAGTTTCTGACACGTTGAATCTAGGGTCAGAAGAGGTGACAGACAAAGTAGAGTTGGAAGAGACAAAACAACAAACAACACGAGGGGAGGAGGGTGTTTTCGGCGATAAAGAGAGAAATTGTCTGGAGGTTAATCCTTTTCTAGCTCTGACATGGATTGATGGGGAGGATTTGGGGGAAGATCTTGACAAAAGGGGTGAAGAGTTTCTCTCTGCTCAGGAAGGAGGTGGGTGGTGTTTGGAGAATGAAGAAAGGGTTTCACGTGGTGAGAGAGAAATAGGGTATGAGGTGGACTTTGACTTTAATTCAAATTTGAGGGATGTTGGGCATGTTGACAGTTGGGCCGGGTTGGACAATATTGAGTTGGGTTGTGTCAAAAACCAAAATACTTTAAAAAATAAAGACAAAGAAGTAGCCAGACTTAAACAACAATATGAGGAGGAGTTTTTTGCTGCTAAAACTCTTGCCTCTGGTCAACGTAATCTCTCAAAGGCCATGAAAGCAAAGAAGCACGGTGGCAACCCTATTTCTGGTGCTATTGATTTCGTGAGTGGTATGATGAAGGCCGGTAGATTTGCTCGTGTCATCAAACAAAGCGCAGGTGGGCGGAAGGGGAAGAATGGAAAGAAGAAAGGGAATAAAAGACACACTAAAGCTACAGTAGCAGGCTCTAATGACTCAATTAGTGAGGAGTCTGTCCATTTGGAAGGTTTGCAAAATAGGTGCAGGAAGCTAGTGCCTGTGGCAGCGCTGGAAGTGGTGTTGACTGAA 2001 0.4503 MREKGRERRSGGGREQELSNDTKKHSNFNPDFAGYHHNKQITTFFVTNFPEDVTTDDLWTTFARYWKVGEVYIPKKRDKFDRRFGFARFVEVRDAQKLLERIEGTWIGTYKLRANLSRFNRGELQHRDDSHLKSKVESRVGGRLVDLTNIYLSKELWGWELGVVNVEPIPAALERLKHSFVGVLRDENLADNIHVLIAMEGFQDVKATLLGFDKILLSSSLEDGVLNAIQADKAWWNSKFLEINKWSLDLKASGRRIWVRIFGTPPHVWGWECFNRILNRFGRLSGLDASTDKQSRLDVARAQVVVSSWDFLDESVEILVGKDRFVIRVVEERFGDIDLGVKRCMDPDLFCVGSLADEAASRSPSEAGDCLVNDDGKHDGEERREWIEGWSEQGSDEDLGVGFYPTVLGTAVSDTLNLGSEEVTDKVELEETKQQTTRGEEGVFGDKERNCLEVNPFLALTWIDGEDLGEDLDKRGEEFLSAQEGGGWCLENEERVSRGEREIGYEVDFDFNSNLRDVGHVDSWAGLDNIELGCVKNQNTLKNKDKEVARLKQQYEEEFFAAKTLASGQRNLSKAMKAKKHGGNPISGAIDFVSGMMKAGRFARVIKQSAGGRKGKNGKKKGNKRHTKATVAGSNDSISEESVHLEGLQNRCRKLVPVAALEVVLTE 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3929g00001 667 SUPERFAMILY RNA-binding domain, RBD 36 122 IPR035979 GO:0003676
Trme3929g00001 667 SMART rrm1_1 43 115 IPR000504 GO:0003723
Trme3929g00001 667 MobiDBLite consensus disorder prediction 1 24 - -
Trme3929g00001 667 MobiDBLite consensus disorder prediction 610 636 - -
Trme3929g00001 667 Pfam Domain of unknown function (DUF4283) 173 304 IPR025558 -
Trme3929g00001 667 PANTHER DUF4283 DOMAIN PROTEIN 196 368 - -
Trme3929g00001 667 MobiDBLite consensus disorder prediction 1 31 - -
Trme3929g00001 667 Coils Coil 534 554 - -
Trme3929g00001 667 CDD RRM_SF 45 115 - -
Trme3929g00001 667 Gene3D - 41 128 IPR012677 -
Trme3929g00001 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 112 IPR000504 GO:0003723
Trme3929g00001 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 119 IPR000504 GO:0003723
Trme3929g00001 667 MobiDBLite consensus disorder prediction 613 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3929g00001 Trme-Chr3929 74 2307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3929g00001 41 108 Eukaryotic Initiation Factors Gene Family AT1G71770 30.882 3.17e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3929g00001 - K12891 vvo:131631862 147.902