Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39289g00001 ATGGCTGAAATTCACTCTCAAACTCCAACAATTAGTCCCACAATAAGCAAACCATGTAACAATCCTGCTCCACAACATGGTCTCAATTCTATGGTTCTTGTAGCAGCTATAGTTTGTGCTTTACTATGTGCTCTTGGCCTCAACACAATGTTACAATGTGTGTTCCAATGCGCGAACCGTGTCCTTACCGAACCTCTACAATGGATCGCTTCTCGAAGGCGCAATTCCGGACTCAAGAAGAAAGAAATGGTTGCTTTGCCAACATCAATTTATAATGGATCAACTCCTCCATCTTTGGATTCTAGTTGTGCCATTTGCTTAGCTGAATTTTGTGATGGTGATAATATGAAGTTGCTACCAAAGTGTAATCATCGTTTTCATGTTGTTTGTATTGATAAGTGGTTACTTTCTCATTCTTCTTGTCCTAATTGTAGGAAAATGATCAAGTCCAATGATTCTGTACATTGCTTAAGCATTGTCATATCATAG 489 0.3885 MAEIHSQTPTISPTISKPCNNPAPQHGLNSMVLVAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWIASRRRNSGLKKKEMVALPTSIYNGSTPPSLDSSCAICLAEFCDGDNMKLLPKCNHRFHVVCIDKWLLSHSSCPNCRKMIKSNDSVHCLSIVIS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39289g00001 162 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Trme39289g00001 162 PANTHER RING-H2 FINGER PROTEIN ATL78 19 150 IPR044602 GO:0016567|GO:0016740
Trme39289g00001 162 Pfam Ring finger domain 102 145 IPR001841 -
Trme39289g00001 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 154 IPR013083 -
Trme39289g00001 162 SMART FANCL_C_2 99 153 - -
Trme39289g00001 162 SUPERFAMILY RING/U-box 102 151 - -
Trme39289g00001 162 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39289g00001 Trme-Chr39289 178 666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39289g00001 11 146 C3H Transcription Factor Family AT3G10910 38.816 4.83e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39289g00001 - K19040 psat:127138077 289.271