Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3923g00001 ATGTTACAATCTCTTGCAAAGAACGTCCAACGAGTTACTTTAGCAACTCTTTCATCAGAGTTCCTTGTCATTCCATTTGGTTCTTCTGAACCTCTCAAGCTAGAAATTTGCATAACCCCCTTGATGCAAATCTACGGAAAGACCCTGACTGGAAAGATGATCCCCGTGAGGGTTAAGAGTTTAGACACGATAGTCAATGTGAAGAAAAAGTTTCTTGACAAGGAGGGCTATGCAGTTCCCGATCAAGTTCTGATCTTTGCTGGTAAGCAACTAGAAGACAACCTGACCCTTGCCAATTACAACATCCAAGACAAGTCAACCATCGATTTTATGCTCCGCCTCACTGGGGACTAG 354 0.4322 MLQSLAKNVQRVTLATLSSEFLVIPFGSSEPLKLEICITPLMQIYGKTLTGKMIPVRVKSLDTIVNVKKKFLDKEGYAVPDQVLIFAGKQLEDNLTLANYNIQDKSTIDFMLRLTGD 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3923g00001 117 SUPERFAMILY Ubiquitin-like 25 116 IPR029071 -
Trme3923g00001 117 Gene3D - 39 117 - -
Trme3923g00001 117 ProSiteProfiles Ubiquitin domain profile. 42 117 IPR000626 GO:0005515
Trme3923g00001 117 PRINTS Ubiquitin signature 52 72 IPR019956 -
Trme3923g00001 117 PRINTS Ubiquitin signature 73 93 IPR019956 -
Trme3923g00001 117 PRINTS Ubiquitin signature 94 115 IPR019956 -
Trme3923g00001 117 PANTHER UBIQUITIN 42 116 - -
Trme3923g00001 117 Pfam Ubiquitin family 47 114 IPR000626 GO:0005515
Trme3923g00001 117 SMART ubq_7 42 113 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3923g00001 Trme-Chr3923 90 623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3923g00001 42 116 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 62.667 4.04e-24 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3923g00001 - K08770 mtr:11432566 132.109