Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39230g00001 CACTGTCATAGTAGGGGTGTGTTGCATCGTGACATCAAGGGCTCTAATCTTCTAGTTGATAACAACGGAAATCTAAAGATCGGAGATTTTGGTCTAGCAACTGTCCATGAACCTAATAGCAAGGTGCCATTGACAAGCCGTGTCGTGACTCTTTGGTATAGGGCCCCTGAACTTTTACTAGGTGCTACTGACTATGGTGCTACAATTGACTTGTGGAGTGCTGGTTGCATTCTAGCTGAATTGTTGATGGGTAAGCCTATCATGCCTGGAAGGACAGAGGTGGAACAAATGCACAAAATTTTTAAGCTTTGTGGTTCTCCATCTGAAGAGTATTGGCAAAGAAAAAAACTTCCATATGCAACAAGTTTTAAACCACAAAACGCTTACAAACGACAACTCGCTGATACATTTAAAGACTTTCCTTCTACTGCATTGGAACTTGTTGATAGGCTCCTTTCAATGGAACCAGAACAACGAGGAACTGCAACTTCTGCCCTTCAGAGTGAGTTCTTCACTACGGATCCTTTGCCTTGTGATCCTTCGCGTTTACCAAAGTTTCCACCAAGCAAGGAGTTCGATCTAAAGCGTCAAAATAAAGAAGCCGCAAGGTATTTTAAATTTTAA 624 0.4199 HCHSRGVLHRDIKGSNLLVDNNGNLKIGDFGLATVHEPNSKVPLTSRVVTLWYRAPELLLGATDYGATIDLWSAGCILAELLMGKPIMPGRTEVEQMHKIFKLCGSPSEEYWQRKKLPYATSFKPQNAYKRQLADTFKDFPSTALELVDRLLSMEPEQRGTATSALQSEFFTTDPLPCDPSRLPKFPPSKEFDLKRQNKEAARYFKF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39230g00001 207 SUPERFAMILY Protein kinase-like (PK-like) 1 179 IPR011009 -
Trme39230g00001 207 Gene3D Transferase(Phosphotransferase) domain 1 1 206 - -
Trme39230g00001 207 Pfam Protein kinase domain 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme39230g00001 207 ProSitePatterns Serine/Threonine protein kinases active-site signature. 7 19 IPR008271 GO:0004672|GO:0006468
Trme39230g00001 207 PANTHER CELL DIVISION PROTEIN KINASE 1 177 - -
Trme39230g00001 207 FunFam Mitogen-activated protein kinase 1 184 - -
Trme39230g00001 207 ProSiteProfiles Protein kinase domain profile. 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme39230g00001 207 SMART serkin_6 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39230g00001 Trme-Chr39230 3 902 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39230g00001 1 207 Core Cell Cycle Gene Families AT5G10270 54.206 3.66e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme39230g00001 Pkinase 7.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39230g00001 - K08819 gmx:100817858 345.895