Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39222g00001 GATGATGGGACTGATCACGTGCGTGTAGTTGGAGCTCGGGGTGCCACTGGTTTTGTATTACCTGTTGCAAGCGAGGCATTTGAAGAGTCGGGTCGGACACTTGTACGTGGAACATTGGATTATCTCCAAGGTCTAAAGATGCTGGGAGTTAGGAGAGTTGAACGGGTACTTCCAGTTGGAACTTCCTTGAACGTTGTTGGTGAGGTAATCTAA 213 0.4836 DDGTDHVRVVGARGATGFVLPVASEAFEESGRTLVRGTLDYLQGLKMLGVRRVERVLPVGTSLNVVGEVI 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39222g00001 70 Pfam E3 Ubiquitin ligase 2 69 IPR022170 GO:0004842|GO:0006996|GO:0016567
Trme39222g00001 70 PANTHER - 1 70 IPR044231 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39222g00001 Trme-Chr39222 279 613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39222g00001 1 70 C3H Transcription Factor Family AT1G63900 74.286 2.99e-31 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39222g00001 K15688 - gmx:100800734 119.783