Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39214g00001 TCAACTTCCAAAACTGGAAAACATGGACATGCTAAGTGTCACTTTGTTGGTATTGATATCTTTACTGGCAAAAAACTTGAAGATATTGTTCCTTCTTCTCATAACTGTGATGTTCCTCATGTCAATCGTACTGATTACCAGCTCATTGATATCTCAGAGGATGGATTTGTGAGTCTGCTGACTGAGAGTGGCGGTACTAAGGATGACCTTAAGCTTCCAACCGATGAAGCTCTGCTTTCGCAGGTTAGTTTGTTTGATAATCTCGACAGCTTTTGCTTGTTGTGTTGA 288 0.4028 STSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLKLPTDEALLSQVSLFDNLDSFCLLC 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39214g00001 95 Gene3D - 41 92 IPR012340 -
Trme39214g00001 95 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 82 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Trme39214g00001 95 SUPERFAMILY Translation proteins SH3-like domain 1 48 IPR008991 -
Trme39214g00001 95 FunFam Eukaryotic translation initiation factor 5A 41 93 - -
Trme39214g00001 95 SUPERFAMILY Nucleic acid-binding proteins 41 83 IPR012340 -
Trme39214g00001 95 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 40 82 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Trme39214g00001 95 Gene3D - 1 39 IPR014722 -
Trme39214g00001 95 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 5 12 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Trme39214g00001 95 SMART eIF_5a_2 40 93 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Trme39214g00001 95 NCBIfam translation initiation factor IF-5A 1 76 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39214g00001 Trme-Chr39214 2 932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39214g00001 1 93 Eukaryotic Initiation Factors Gene Family AT1G26630 80.645 5.64e-51 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39214g00001 K03263 - han:110926196 165.622