Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39180g00001 TCATCTCTGCTTCATTCTAGGCCTAAATCAACTGTGGGAACTCCAGCCTACATAGCACCAGAGGTTCTTTCACGTAGAGAATATGATGGAAAGGAAATTCAGACATGGTTGCCAATTTCTATTTGTATGAGGCCATCAACCAGTATGACCATGCTTAATGTGCCACGGTTGGCAGATGTATGGTCTTGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAATCGAATTATGGCTGTTCAATACAAGATTCCAGATTATGTTCACATAACTCAAGACTGTAGACATCTGCTGTCTCGCATTTTTGTGGCAAATCCAGCTAGGGTATGCACAGCTTATGTTGTTTAA 396 0.4192 SSLLHSRPKSTVGTPAYIAPEVLSRREYDGKEIQTWLPISICMRPSTSMTMLNVPRLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTINRIMAVQYKIPDYVHITQDCRHLLSRIFVANPARVCTAYVV 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39180g00001 131 SUPERFAMILY Protein kinase-like (PK-like) 5 124 IPR011009 -
Trme39180g00001 131 Gene3D Transferase(Phosphotransferase) domain 1 1 131 - -
Trme39180g00001 131 Pfam Protein kinase domain 57 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme39180g00001 131 ProSiteProfiles Protein kinase domain profile. 1 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme39180g00001 131 PANTHER SERINE/THREONINE KINASE 8 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39180g00001 Trme-Chr39180 116 1050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39180g00001 3 124 CBL-interacting serine-threonine protein kinases AT5G10930 33.607 1.60e-16 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trme39180g00001 Pkinase 1.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39180g00001 K14498 - pvy:116129810 193.356