Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39147g00001 ATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAGATGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACACTCTTGAAGTTTATTTAAGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACGAAAACTGAAGAAAGAGGCTCTCTACTACGGAAATTTAATGCCCCTGACTCCCCATACTTTATGTTTCTCTTAAGCACCCGGGCAGGTGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGAATTGGACAAAAAAAGGAAGTTCGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGTATAGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACGTCAACAGGTTTGTAA 579 0.4197 MQLRKCCNHPYLFVGDYDMYRCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTGL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39147g00001 192 SMART helicmild6 61 145 IPR001650 -
Trme39147g00001 192 CDD SF2_C_SNF 23 156 - -
Trme39147g00001 192 Pfam Helicase conserved C-terminal domain 32 145 IPR001650 -
Trme39147g00001 192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 187 IPR027417 -
Trme39147g00001 192 Gene3D - 1 191 IPR027417 -
Trme39147g00001 192 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 35 192 IPR001650 -
Trme39147g00001 192 PANTHER SNF2/RAD54 HELICASE FAMILY 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39147g00001 Trme-Chr39147 471 1049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39147g00001 30 173 RAD5 or RAD16-like Gene Family AT5G22750 36.986 7.45e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39147g00001 - - gmx:100786280 375.17