Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39113g00001 ATGCAAGGATGGTGTAACCTTATCGATCACGAACCTACCCTTCCTACAACAGTCATATCTTATGATGCCAAATTTTCTGCTTGCATGAATTTAGAGTCACATTCAATCACATTCATGTACAAGGAAGGTGATGCTGCACAACAAGATATAAACCAGACGGAATGTGTTATCTGTTTAACAGTCTTTCAAGAAGACGAATGTGTTCGGAAGCTTGATAGTTGCAAGCATGTGTTTCATACATCTTGCATTGATAAGTGGCTTTACTCTCATTCGGGATGTCCGCTATGTCGAACTCAGATTGATCAAGTTACTTCGCCAAATGAATCATTGGCAAATGATCACATGATTGTGGCCATTGTTGACTCCAGAACTTGA 375 0.3973 MQGWCNLIDHEPTLPTTVISYDAKFSACMNLESHSITFMYKEGDAAQQDINQTECVICLTVFQEDECVRKLDSCKHVFHTSCIDKWLYSHSGCPLCRTQIDQVTSPNESLANDHMIVAIVDSRT 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39113g00001 124 Pfam Ring finger domain 54 97 IPR001841 -
Trme39113g00001 124 ProSiteProfiles Zinc finger RING-type profile. 55 97 IPR001841 -
Trme39113g00001 124 SUPERFAMILY RING/U-box 47 105 - -
Trme39113g00001 124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 106 IPR013083 -
Trme39113g00001 124 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 36 102 IPR044675 -
Trme39113g00001 124 SMART ring_2 55 96 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39113g00001 Trme-Chr39113 212 586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39113g00001 35 117 C3H Transcription Factor Family AT5G17600 42.857 2.07e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39113g00001 - - mtr:25500542 190.66