Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39111g00001 ATGGGCAAAGAGGAAACAAACAGATTCCCAAGCCTCGACTCCTTCTACTTTTCCGGCAAGCAAAATATCTCCGATGTCATCGATCTTTCCGATGAAGACGACGACATTAAAATAATCAATTTCATTCCCAACAATACCTATTTCGGAACACGTAAAAGAAACAACAACTTTGAAAAAGGAGAGTGTTCATATTCAAAAGGCAGGCGGTTTGTTTGCAAAATCTGTCTGGATACTAAAACGACGAGGGATGCTTTCTACATCAGTGGTTGCAATCACGCTTATTGTTCTGATTGCGTGGCGAAGCACATCCGTTCCAAACTTGATGATAACATTATTAACATTCGGTGTCCCTTTTTTTTGTGTAAATCAGGTACGTTAGAAGCAGGAGTTTGCCGTTCGATTCTTCCAACTGAGGATTTTAAACGATGGGATAAGGCGGTTTGCGAGGTTTTGTTCAATATTAGGGAGAAATTCTATTGTCCTTTTGTAGACTGTTCTGCTCTTTTGATCAATGACGGAACCGAGGCTGTTAAGAATTTAGAATGTCCTAATTGTAATAGGATGCTCTGTGGACTGTGTAAGATTCGATCGCATGAAGGATTCGGATGCAGCGAGTTCAAGAAACTGAAGCGGGACGATAAGGGGAAAGATGTTATACTGGCTAACATTGCGGAAGATATGAGGTGGAGACAATGTCCCAAGTGCAGTGATTATGTTGCCAAATCTGGGGGCTGCAACATCATGACATGCAG 752 0.4162 MGKEETNRFPSLDSFYFSGKQNISDVIDLSDEDDDIKIINFIPNNTYFGTRKRNNNFEKGECSYSKGRRFVCKICLDTKTTRDAFYISGCNHAYCSDCVAKHIRSKLDDNIINIRCPFFLCKSGTLEAGVCRSILPTEDFKRWDKAVCEVLFNIREKFYCPFVDCSALLINDGTEAVKNLECPNCNRMLCGLCKIRSHEGFGCSEFKKLKRDDKGKDVILANIAEDMRWRQCPKCSDYVAKSGGCNIMTC 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39111g00001 250 FunFam RBR-type E3 ubiquitin transferase 67 154 - -
Trme39111g00001 250 SMART ring_2 72 119 IPR001841 -
Trme39111g00001 250 Gene3D - 201 250 - -
Trme39111g00001 250 ProSitePatterns Zinc finger RING-type signature. 90 99 IPR017907 -
Trme39111g00001 250 ProSiteProfiles Zinc finger RING-type profile. 72 117 IPR001841 -
Trme39111g00001 250 ProSiteProfiles TRIAD supradomain profile. 68 250 IPR044066 -
Trme39111g00001 250 SMART ibrneu5 141 203 IPR002867 GO:0008270
Trme39111g00001 250 Pfam IBR domain, a half RING-finger domain 155 203 IPR002867 GO:0008270
Trme39111g00001 250 SUPERFAMILY RING/U-box 68 150 - -
Trme39111g00001 250 SUPERFAMILY RING/U-box 145 208 - -
Trme39111g00001 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Trme39111g00001 250 Pfam Zinc finger, C3HC4 type (RING finger) 72 117 IPR018957 GO:0046872
Trme39111g00001 250 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 52 250 IPR031127 GO:0004842|GO:0016567
Trme39111g00001 250 SUPERFAMILY RING/U-box 218 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39111g00001 Trme-Chr39111 169 920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39111g00001 11 250 C3H Transcription Factor Family AT2G19610 24.498 3.13e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39111g00001 K11975 - gmx:100803898 239.58