Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39102g00001 GCTGCTGGTTTCGTTGTGGGGAAAGAAGGACCCATGGTACATACAGGTGCTTGCATTGCTAATTTACTCGGACAAGGCGGTTCTCGTAAATATCGACTCACCTGGAAATGGCTCAGATACTTCAAAAATGATAGAGATCGAAGGGATTTGATCACTTGCGGTGCAGCTGCAGGTGTTGCCGCTGCCTTCCGTGCTCCTGTTGGTGGTGTTCTTTTCGCACTCGAAGAAGCTGCTTCGTGGTGGAGGAGTGCTCTTCTATGGCGTACATTCTTTACCACTGCTGTAGTAGCAGTTGTTTTAAGGAGTCTTATACAATTTTGTCATCAAGGAGGAGGCAAATGTGGTCTCTTTGGCGAAGGAGGACTCATAATGTTTGATGTTAATTCTGCAAAGCCTTCCTACACCACATTCGATCTACTCACAGTTATATTTCTCGGAGTCATTGGAGGTCTTATGGGAAGCCTTTACAATTATCTTGTTGATAAAGTCCTTCGCACTTACACCGCTATAAATGAGTATGAGAGGTCCAATATTCAAGATTTTACTGGTGATGATTATCTCGATTGTGACATCTTGTATTCGATTTGGGCTTCCGTTGCTATCAAAGTGTGTGCCATGTCCAGGGGAGTGCCCTAG 636 0.4481 AAGFVVGKEGPMVHTGACIANLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSLIQFCHQGGGKCGLFGEGGLIMFDVNSAKPSYTTFDLLTVIFLGVIGGLMGSLYNYLVDKVLRTYTAINEYERSNIQDFTGDDYLDCDILYSIWASVAIKVCAMSRGVP 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39102g00001 211 Gene3D Clc chloride channel 1 182 - -
Trme39102g00001 211 PRINTS Plant CLC chloride channel signature 77 85 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trme39102g00001 211 PRINTS Plant CLC chloride channel signature 91 101 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trme39102g00001 211 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 172 - -
Trme39102g00001 211 Pfam Voltage gated chloride channel 1 168 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme39102g00001 211 SUPERFAMILY Clc chloride channel 1 170 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39102g00001 Trme-Chr39102 54 936 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39102g00001 1 172 Ion Channels AT5G49890 86.628 8.22e-93 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39102g00001 K05016 - qsa:O6P43_012129 288.885