Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme390948g00001 CTTCTTATTACATCAACCGATGATCAATCTTTACCAAGCCCTAAAAGTGACAATAATTCCGACACAATTGTAGAGGCGCGTGAAATAAGTGCACCTCCTACATGGAAGAGATACAAGGGTGTGAGGCGTAGGCCATGGGGTAAGTTTGCGGCAGAGATCCGAGATCCAAAAAAGCATGGTGCTAGAGTTTGGCTTGGAACTTATCTGACTGAGGAGGAAGCAGCTTTGGCTTATGACAAAGC 242 0.4545 LLITSTDDQSLPSPKSDNNSDTIVEAREISAPPTWKRYKGVRRRPWGKFAAEIRDPKKHGARVWLGTYLTEEEAALAYDKA 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme390948g00001 81 SMART rav1_2 37 81 IPR001471 GO:0003700|GO:0006355
Trme390948g00001 81 Pfam AP2 domain 37 81 IPR001471 GO:0003700|GO:0006355
Trme390948g00001 81 Gene3D AP2/ERF domain 36 81 IPR036955 GO:0003700|GO:0006355
Trme390948g00001 81 SUPERFAMILY DNA-binding domain 37 81 IPR016177 GO:0003677
Trme390948g00001 81 ProSiteProfiles AP2/ERF domain profile. 37 81 IPR001471 GO:0003700|GO:0006355
Trme390948g00001 81 MobiDBLite consensus disorder prediction 1 27 - -
Trme390948g00001 81 CDD AP2 36 81 IPR001471 GO:0003700|GO:0006355
Trme390948g00001 81 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Trme390948g00001 81 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Trme390948g00001 81 MobiDBLite consensus disorder prediction 1 25 - -
Trme390948g00001 81 PANTHER DNA-BINDING DOMAIN 25 81 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme390948g00001 Trme-Chr390948 68 309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme390948g00001 37 81 AP2-EREBP Transcription Factor Family AT2G44840 82.222 1.67e-22 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme390948g00001 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme390948g00001 K09286 - gmx:102663872 119.012