Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38972g00001 TACCGGAAGAAATATAAACGAGTATGCGTACAAGCAATAAAGAGTTGGGCGCGCCAAATCTTACAAGGNNNNNNNNNNANNCATGGCCATGATCCACCTGTAATTCATAGAGACCTAAAATGTGATAACATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGATCTTGGATTAGCTGCAATTCTTCAAGGTTCTCAATCAGCTCATAGTGTTATCGGTACACCGGAGTTCATGGCACCGGAAATGTACGAAGAAGAATACAATGAACTTGCTGATGTGTACTCATTCGGCATGTGTGTATTAGAAATGCTCACATCTGACTATCCATATAGTGAATGTACTAATCCAGCACAGATTTACAAGAAAGTTACATCGGGAAGGCTACCGATGTCATTCTTCCGCATTGAAGACACCGAAGCGCGGAGGTTCATTGGAAAATGTTTAAAGCCTGCAGCAAAGAGACCGTCTGCGAAAGATTTGTTGCTCGAGCCTTTTCTTTTGGCCGATGATTCGTCGTCAGACAAGAAGTTAGCAATTCAGAAGCCATTTTTGAATGACAGTGAGATGGAAAAACTTCAATTAAGAGATGAATTTTCTAAGACTCAAATGAAAGTAA 622 0.3971 YRKKYKRVCVQAIKSWARQILQGXXXXHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILQGSQSAHSVIGTPEFMAPEMYEEEYNELADVYSFGMCVLEMLTSDYPYSECTNPAQIYKKVTSGRLPMSFFRIEDTEARRFIGKCLKPAAKRPSAKDLLLEPFLLADDSSSDKKLAIQKPFLNDSEMEKLQLRDEFSKTQMKV 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38972g00001 207 Pfam Protein kinase domain 11 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38972g00001 207 SMART serkin_6 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38972g00001 207 FunFam probable serine/threonine-protein kinase WNK9 1 173 - -
Trme38972g00001 207 SUPERFAMILY Protein kinase-like (PK-like) 3 168 IPR011009 -
Trme38972g00001 207 ProSiteProfiles Protein kinase domain profile. 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38972g00001 207 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 175 - -
Trme38972g00001 207 Gene3D Transferase(Phosphotransferase) domain 1 1 175 - -
Trme38972g00001 207 ProSitePatterns Serine/Threonine protein kinases active-site signature. 34 46 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38972g00001 Trme-Chr38972 197 1060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38972g00001 1 194 MAP Kinase Kinase Kinase AT3G51630 69.652 3.11e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trme38972g00001 Pkinase 8.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38972g00001 K08867 - gmx:100272203 350.132