Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38945g00001 ATGCAGATACAGGATCACACCGCTTTAACATGGGCTACTGCTTTCCAGGAGGGTGGTGAGGAGATCATGGGTATGCCCGCAAAAGATTTGTATTTTCTGAAATATGAAGAATCAGATGATGTAGCATTTGCAGCAATCTTCCGCAAGGTTCTCTTCGCTAGATATGTGTTCAAGTTAAAAGTAAAGGAGGAGACNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAAGGTAAACTTTGCATCTGATTCTCGATCTCTTCTGGATTTGATTGATAAACTTATGTCCGAGAAAGCAGAAGGCACCACTATTAACTCTGTGATCAATAAAACTGGACTGGGGAGCCTTGAAACTGGACAAGTTATGCCACCCGTATATAATCCTATAAAGAGCAACACTAATACGGGTAGAGATTATGGGACCCCAGCAAACCAAGTGGGTCAGTATGGAAACCAATATANNNNNNTNNNNNNNNNNTNNNNNNNNNNTGGTTCGTACATGTCATGTAGCACCTGTGGAGGCACTGGGCATAGCTCTGCACAATGCCTAAATATTAGAAATCAATCTGGACAGTCTGCTGGAGGAGGGGCCTTTCCTAACAGGGTATCTGCTGGATCAAGCGGTGCTTCTGGTAATTGCTATAAATGCCAACAACCTGGACATTTTGCAAGAGATTGTCCTGGTATCACTGCAGCACCTTCGGATCAGTATTTGCAGCGCCCAACTGCTGGATCAGGTGGTGGTTCTGGTGATTGCTATAAATGCCAACAACCTGGTCATTGGGCGAGAGATTGTCCTGGTAACGGTGCAGCACCTCAATCTTATGGAAACAGTAATGCAGGGCAAGGAAGATATGGTACTGCTCAAAATCAGCAGTATGGAGGACGATATTGA 906 0.4106 MQIQDHTALTWATAFQEGGEEIMGMPAKDLYFLKYEESDDVAFAAIFRKVLFARYVFKLKVKEETXXXXXXXXXXXXXXXKVNFASDSRSLLDLIDKLMSEKAEGTTINSVINKTGLGSLETGQVMPPVYNPIKSNTNTGRDYGTPANQVGQYGNQYXXXXXXXXXXGSYMSCSTCGGTGHSSAQCLNIRNQSGQSAGGGAFPNRVSAGSSGASGNCYKCQQPGHFARDCPGITAAPSDQYLQRPTAGSGGGSGDCYKCQQPGHWARDCPGNGAAPQSYGNSNAGQGRYGTAQNQQYGGRY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38945g00001 301 ProSiteProfiles Zinc finger CCHC-type profile. 256 270 IPR001878 GO:0003676|GO:0008270
Trme38945g00001 301 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 146 274 - -
Trme38945g00001 301 SMART c2hcfinal6 255 271 IPR001878 GO:0003676|GO:0008270
Trme38945g00001 301 SMART c2hcfinal6 216 232 IPR001878 GO:0003676|GO:0008270
Trme38945g00001 301 SMART c2hcfinal6 172 188 IPR001878 GO:0003676|GO:0008270
Trme38945g00001 301 MobiDBLite consensus disorder prediction 270 301 - -
Trme38945g00001 301 Gene3D - 170 240 - -
Trme38945g00001 301 MobiDBLite consensus disorder prediction 128 148 - -
Trme38945g00001 301 MobiDBLite consensus disorder prediction 129 148 - -
Trme38945g00001 301 ProSiteProfiles Zinc finger CCHC-type profile. 217 231 IPR001878 GO:0003676|GO:0008270
Trme38945g00001 301 Pfam Replication factor-A C terminal domain 1 90 IPR013955 -
Trme38945g00001 301 Pfam Zinc knuckle 216 231 IPR001878 GO:0003676|GO:0008270
Trme38945g00001 301 Pfam Zinc knuckle 256 270 IPR001878 GO:0003676|GO:0008270
Trme38945g00001 301 Gene3D - 1 99 IPR012340 -
Trme38945g00001 301 SUPERFAMILY Retrovirus zinc finger-like domains 242 273 IPR036875 GO:0003676|GO:0008270
Trme38945g00001 301 Coils Coil 59 65 - -
Trme38945g00001 301 Gene3D - 248 279 - -
Trme38945g00001 301 SUPERFAMILY Nucleic acid-binding proteins 1 99 IPR012340 -
Trme38945g00001 301 MobiDBLite consensus disorder prediction 275 301 - -
Trme38945g00001 301 SUPERFAMILY Retrovirus zinc finger-like domains 199 237 IPR036875 GO:0003676|GO:0008270
Trme38945g00001 301 Coils Coil 81 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38945g00001 Trme-Chr38945 56 961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38945g00001 1 200 Core DNA Replication Machinery Family AT5G45400 40.654 9.13e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38945g00001 K07466 - lja:Lj2g3v1548460.1 387.111