Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3892g00001 ATGAAGAAATTCAGAAGACTTGAGAGTGGATTTGAGAAGATGAAGAAATTCAGAAGATCGTCTTCTTCTTTTTTTGAAGAATCTTCAGCAGTTTCTTCTATGCACAAAATTCTTGATCCACAGGGGCCAATGCTTCAGAAATGGAACAACATCTTTGTAATCACATGTGTTATGGCAGTTTCTGTGGACCCTCTTTTCTTTTATATTCCGGTGATTGTCGGAAAAAACAAATGTCTGGATTTGAATGAACCGTTGCAGACTACKGCTAGTGTTCTTCGCACATTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTTAGAACTGGATTTCTTGCGCCTTCTTCTCGTGTTTTTGGAAGAGGTGAACTCATGGACGATCCTTTCGCCATAATGAAAAGATACTCATTGAGTTCTCATTTCATCATCGACATTCTTTCAATTATTCCACTTCCACAG 462 0.3788 MKKFRRLESGFEKMKKFRRSSSSFFEESSAVSSMHKILDPQGPMLQKWNNIFVITCVMAVSVDPLFFYIPVIVGKNKCLDLNEPLQTTASVLRTFFDLFYILRIIFQFRTGFLAPSSRVFGRGELMDDPFAIMKRYSLSSHFIIDILSIIPLPQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3892g00001 154 SUPERFAMILY Voltage-gated potassium channels 39 153 - -
Trme3892g00001 154 Pfam Ion transport protein 48 153 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trme3892g00001 154 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 19 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3892g00001 Trme-Chr3892 267 728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3892g00001 2 154 Ion Channels AT5G53130 60.256 4.32e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3892g00001 K05391 - gmx:100816236 204.912