Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3887g00001 AGTCTTGAGGCTGATGGCTTGAAGGACCACTTGGCTAGTTTTGCTGAACAATTGAATAAGGCAAGGCAAATGATTTGTCCTCCTGATAGGAAACAATCAAAACTTGGAGCCTTGCTCCCGACCTTGTCTGAGGTTGTGGCCAAAGAACACAAGAGGCTCCTTGCTCGGAAATCAATTATTGAAAAGAGGAAAGAGGAACAAGAACGACAGCTTCTTGAAATGGAACGCGAGGAGGAGTCCAAGAAGTTAAGACTGCAGAAAGTTAATGATGAAGCCGAGAAAATACGACTGGAAAAAGAGTCTGAGTTGAGGCGAAAGCAAAGGATCCAAAGGGAAATGGAGGAAAAAGAAAAAGAAGAAGCACGGCTTTTACTTGAGGAACATGAAAAGCGTTTTAAGTTAAGGGGTAAAAAGCCCCCCATCATAGAGAAGGCCAACCTTTCTAGGCAGACCTTGTTACAGATGAGTTTGATTGAACAACAAAAACAGAGACAAGATATTGAGAAGAAACTGCAGAAATTAGCTAAAACCATGGATCATTTGGAAAGAGCAAAGAGAGAGGAGGCTGCTCCACTTATTGAAGCTGCATATCAACAGCGCCTAGTGGAAGAGAGGATTCTTCATGAGCGTGAACAANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNAGTAATTGAATTTTTTCATAATCGAGCAGAATCTCCCTTTATGGAGGTTGAACTGAGCAAACAACGTCATGCTGGAGATCTCCATGAGAAGGAGAGGCTTAGTCGAATGATGGGCAATAAAGAGATATATCAAGAGAAAGTTGTCAATCATCGCCAAGCAGAAACTGATAGACTTAAGAGAGAAAGGGAGGATCGCATCTCTAGGATTTTACAATCCAGAAAACAGGAGAGGGAAAAGATGAGGAAGTTGAAGTATTTTCTTCAGGTTGAAGAAGAGAGACGACAAAAATTGCGTGAGGCAGAAGAAGCTCAGAAGCGTCAAGAGGCAGAGAGAAAAAAGAGGGAACAGCTTGAACGCCAAGCAAAATTGGATGAGATAGCTGAAAAGCAGAGGCAAAGGGAAAGAGAAATTGAAGAAAAGGCTGAGAGGGAAAAGAGGGAAGCATTGTTGGGCAGACCTACTGAACCTGCTCTGAGGCCTTATGAGCCTCCTGCCCGTCCATTGGAGTCTGGTGCTGCTCCCGCTGCTGCAGCTGCTGCATCCTCAGCTCCAGGGAAATATGTCCCCAAGTTCCGGCGAGGAGGTGCTGATACCACAAGAGCTCCTCCTCCAGAAGCAGATCGTTGGGGCAACAGTAGCAGCAAGCCAGATGGTGACAGGTGGGACCGCAACTCCTCATTTGGTTCTGGCGGGGGTTCAAGGTCATCTACAACCTGGTCATCTTCCAGGGTTTCGCGTGATCGTCAGTGA 1425 0.4442 SLEADGLKDHLASFAEQLNKARQMICPPDRKQSKLGALLPTLSEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKKLRLQKVNDEAEKIRLEKESELRRKQRIQREMEEKEKEEARLLLEEHEKRFKLRGKKPPIIEKANLSRQTLLQMSLIEQQKQRQDIEKKLQKLAKTMDHLERAKREEAAPLIEAAYQQRLVEERILHEREQXXXXXXXXXXXXXVIEFFHNRAESPFMEVELSKQRHAGDLHEKERLSRMMGNKEIYQEKVVNHRQAETDRLKREREDRISRILQSRKQEREKMRKLKYFLQVEEERRQKLREAEEAQKRQEAERKKREQLERQAKLDEIAEKQRQREREIEEKAEREKREALLGRPTEPALRPYEPPARPLESGAAPAAAAAASSAPGKYVPKFRRGGADTTRAPPPEADRWGNSSSKPDGDRWDRNSSFGSGGGSRSSTTWSSSRVSRDRQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3887g00001 474 Coils Coil 50 131 - -
Trme3887g00001 474 Coils Coil 311 372 - -
Trme3887g00001 474 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 2 214 IPR027512 GO:0005852
Trme3887g00001 474 MobiDBLite consensus disorder prediction 348 377 - -
Trme3887g00001 474 Coils Coil 157 187 - -
Trme3887g00001 474 MobiDBLite consensus disorder prediction 348 474 - -
Trme3887g00001 474 MobiDBLite consensus disorder prediction 451 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3887g00001 Trme-Chr3887 164 2276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3887g00001 1 468 Eukaryotic Initiation Factors Gene Family AT4G11420 51.710 5.52e-110 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3887g00001 K03254 - gmx:100782598 462.225