Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme388642g00001 ATGACTAGACTGCTAGACATACTTGAAGATTATTTGATGTTTCGTGGATACCAATATTGTCGCATAGATGGTAATACTGGTGGAGATGACCGTGATGCGTCCATTGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGAGCTGGAGGTCTCGGCATCAATCTTGCTACTGCCGATGTTGTTATTCTTTATGATAGTGACTG 221 0.4118 MTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSD 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme388642g00001 73 Pfam Helicase conserved C-terminal domain 10 72 IPR001650 -
Trme388642g00001 73 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 73 IPR027417 -
Trme388642g00001 73 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 73 IPR001650 -
Trme388642g00001 73 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 73 - -
Trme388642g00001 73 SMART helicmild6 6 72 IPR001650 -
Trme388642g00001 73 Gene3D - 1 73 IPR027417 -
Trme388642g00001 73 CDD SF2_C_SNF 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme388642g00001 Trme-Chr388642 48 268 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme388642g00001 2 71 RAD5 or RAD16-like Gene Family AT5G43530 38.571 8.19e-11 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme388642g00001 K11654 - gmx:100791510 149.828