Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3882g00001 AGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCTGGAGGAATTCTTGCCGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTGCTTTAATACTAAAAGAAATGCCTCCATTGCTTAAGACGTGCACTGATGCTCAAAAAAGTGTATTAGAAACCTTGGATTTGGATGATGACCCACTTCCTGAGAATGGTGTAGTGAAGATGGAACCTAATGTGTGTCAGTCTAATAGAAATGCAATCACAAGTGTGAATTTGTCGGTGCATGCAAAGGGTAGACCATCTGCAGGAACCCTTGTTGTTTGTCCAACTAGTGTCCTGCGGCAGTGGGCTGATGAGCTGCATAATAAGGTAACCTGCAAAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGCAGTCGAACCAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTTTGACAACCTATTCAATTGTTAGCATGGAGGTCCCCAAGCAGCCTCTGGTTGACAAAGATGATGGAGAAAAAGGAATTTATGAAGATCATGCCGTGCCAAGTAGGAAAAGGAAATGCCCTACTAGTTCTAAAAGCAGCAAGAAGGCTTTGGACAGCATGATGCTTGAGGCTGCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCTAAGCGCAGATGGTGCTTGTCAGGGACTCCAATCCAGAATTCCATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCTTATGCCGTGTACACATCTTTCTGTTCTACGATCAAGATTCCTATCAGCAGAAATCCATCAAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACAATCATGTTACGCCGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATATCTTTGCCACCTAAATCTGTGGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGTACTGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCTTGCGATCACCCTCTGCTTGTCAAGCGTTACAATTCTACTACTCTCTGGAAATCTTCAGTTGAGACGGCAATGAAGCTTCCTCAGGAAAAACAGTTATTTCTTTTAAAATGTTTAGAGGCTTCCCTGGCCCTCTGCG 1288 0.427 RIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKEMPPLLKTCTDAQKSVLETLDLDDDPLPENGVVKMEPNVCQSNRNAITSVNLSVHAKGRPSAGTLVVCPTSVLRQWADELHNKVTCKANLSVLVYHGSSRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDGEKGIYEDHAVPSRKRKCPTSSKSSKKALDSMMLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSTTLWKSSVETAMKLPQEKQLFLLKCLEASLALC 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3882g00001 429 Gene3D - 328 425 IPR027417 -
Trme3882g00001 429 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 195 325 - -
Trme3882g00001 429 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 11 275 IPR014001 -
Trme3882g00001 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 313 IPR027417 -
Trme3882g00001 429 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 429 - -
Trme3882g00001 429 MobiDBLite consensus disorder prediction 173 189 - -
Trme3882g00001 429 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 83 173 - -
Trme3882g00001 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 391 IPR027417 -
Trme3882g00001 429 Gene3D - 85 171 IPR038718 -
Trme3882g00001 429 CDD DEXDc_SHPRH-like 1 313 - -
Trme3882g00001 429 Pfam SNF2-related domain 17 390 IPR000330 GO:0005524|GO:0140658
Trme3882g00001 429 SMART ultradead3 1 290 IPR014001 -
Trme3882g00001 429 MobiDBLite consensus disorder prediction 173 198 - -
Trme3882g00001 429 Gene3D - 1 58 IPR038718 -
Trme3882g00001 429 Gene3D - 172 326 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3882g00001 Trme-Chr3882 485 2280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3882g00001 1 429 RAD5 or RAD16-like Gene Family AT1G61140 66.667 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme3882g00001 SNF2_N 5.4e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3882g00001 - - gmx:100792901 749.584