Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38825g00001 TTCGTAGCAGCATGCAGAAAGCCACCTGTTTATTGTGTTATCACAGAATATCTATCGGAAGGTTCCTTGAGGTCATATTTGCATAAGTTGGAGGGAAAACCCATTTCTCAACAAAAGCTAATTGCTTTTTCTCTGGATATTGCTCATGGAATGCAATATATACACTCTCAAGGTGTCATTCATCGAGACCTTAAACCAGAGAATGTTCTTATTAATGAAGACTTTCACCTTAAAATTGCTGATTTTGGCATTGCTTGTGAGGAAGCATACTGTGACTTACTTGCTGATGACCCTGGTACCTACCGCTGGATGGCACCTGAGATGATCAAACGGAAATCCTATGGGAGAAAAGTTGACGTGTATAGTTTTGGCCTTATCTTATGGGAAATGCTTACTGGTACAATACCATATGAGGATATGACTCCCATCCAGGCTGCTTTTGCTGTCGTAAATAAGGTATGCTCATTTGCAATTAAGTCTTACGCTTTGATTGAAATGTCAATTATTTTTATTTGCAAATATTCCTTCACTTAA 534 0.3839 FVAACRKPPVYCVITEYLSEGSLRSYLHKLEGKPISQQKLIAFSLDIAHGMQYIHSQGVIHRDLKPENVLINEDFHLKIADFGIACEEAYCDLLADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMLTGTIPYEDMTPIQAAFAVVNKVCSFAIKSYALIEMSIIFICKYSFT 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38825g00001 177 ProSitePatterns Serine/Threonine protein kinases active-site signature. 59 71 IPR008271 GO:0004672|GO:0006468
Trme38825g00001 177 ProSiteProfiles Protein kinase domain profile. 1 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38825g00001 177 Pfam Protein tyrosine and serine/threonine kinase 2 149 IPR001245 GO:0004672|GO:0006468
Trme38825g00001 177 Gene3D Transferase(Phosphotransferase) domain 1 1 167 - -
Trme38825g00001 177 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 150 - -
Trme38825g00001 177 PRINTS Tyrosine kinase catalytic domain signature 53 71 IPR001245 GO:0004672|GO:0006468
Trme38825g00001 177 PRINTS Tyrosine kinase catalytic domain signature 118 140 IPR001245 GO:0004672|GO:0006468
Trme38825g00001 177 PRINTS Tyrosine kinase catalytic domain signature 15 28 IPR001245 GO:0004672|GO:0006468
Trme38825g00001 177 PRINTS Tyrosine kinase catalytic domain signature 99 109 IPR001245 GO:0004672|GO:0006468
Trme38825g00001 177 SMART serkin_6 1 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38825g00001 177 SUPERFAMILY Protein kinase-like (PK-like) 2 158 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38825g00001 Trme-Chr38825 386 919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38825g00001 1 169 MAP Kinase Kinase Kinase AT5G58950 69.822 8.84e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trme38825g00001 PK_Tyr_Ser-Thr 5.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38825g00001 - - psat:127105197 301.982