Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme387727g00001 GCTAGCAATGTGCTTTTAGATTTTGAACTCAATGGAAGATTAGGTGATTTTGGTTTGGCAAAGTTATATGAACACGGTGCTAATCCAGGAACATCAAGAGTGGTTGGAACATCAAAATTGGTTGGAACATTTGGCTATTTGGCACCGGAGTTACTTAGAACCGGAATAGCAACAACAAGCTCCGACGTATTTGCATTCGCCGCGCTTCTTCTCGAGGTTGTCTGTGGAAGAAGGCCTATTGATCTTAAGGCATTACAAGAAGAGTTGGTGTTAGTAGATTGGGTTTGGGAAAGGTTCAAAGATGGAAG 308 0.4221 ASNVLLDFELNGRLGDFGLAKLYEHGANPGTSRVVGTSKLVGTFGYLAPELLRTGIATTSSDVFAFAALLLEVVCGRRPIDLKALQEELVLVDWVWERFKDG 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme387727g00001 102 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme387727g00001 102 SUPERFAMILY Protein kinase-like (PK-like) 1 97 IPR011009 -
Trme387727g00001 102 PANTHER - 1 97 - -
Trme387727g00001 102 Pfam Protein kinase domain 2 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme387727g00001 102 Gene3D Transferase(Phosphotransferase) domain 1 1 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme387727g00001 Trme-Chr387727 1 308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme387727g00001 1 102 Receptor kinase-like Gene Family AT3G55550 67.647 7.67e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme387727g00001 Pkinase 5.9e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme387727g00001 - - gmx:100816866 162.54