Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38762g00001 ATGACAGTTAGGATTCGGGGCCAGTCTCCAAGAATGCTTTCGAGAGCTATTTTTAGATTTCAGAATCCATCTTTTCTCTGTATTGGAATTAGAACATATGAACGAGCTTGCATTAAGAAATGGCTTGACGCGGGGCATCGAACATGTCCCATCACTCAGCAGATTATTTCCAGCCCCATCCTCATACCCAACCATGCTTTATACAGCCTGATATCAAATTGGTGTGAGGCAAATGGAGT 239 0.431 MTVRIRGQSPRMLSRAIFRFQNPSFLCIGIRTYERACIKKWLDAGHRTCPITQQIISSPILIPNHALYSLISNWCEANGV 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38762g00001 80 SMART Ubox_2 13 74 IPR003613 GO:0004842|GO:0016567
Trme38762g00001 80 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 80 IPR013083 -
Trme38762g00001 80 ProSiteProfiles U-box domain profile. 32 80 IPR003613 GO:0004842|GO:0016567
Trme38762g00001 80 Pfam U-box domain 21 78 IPR003613 GO:0004842|GO:0016567
Trme38762g00001 80 PANTHER U BOX DOMAIN-CONTAINING 31 80 - -
Trme38762g00001 80 SUPERFAMILY RING/U-box 31 79 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38762g00001 31 80 U-box Gene Family AT2G28830 60.000 1.16e-19 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38762g00001 - - tpra:123888033 102.064