Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38721g00001 GTTTCATGTTGGATTTTGACTGGAGAACGACAAACTGCTGTCATCAGGTCCAAATATGTCCAAGTATTACTAAATCAGGATATGAGTTTTTTCGATACTTACGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGCTGCTTATCCAGTCTGCTCTTAGCGAAAAAGTTGGAAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCCTTATCAATTGTTGGCAGATTGCTTTGATAACATTAGCAACAGGTCCTTTTATTGTTGCCGCAGGAGGAGTATCAAATATATTCCTCCATAGACTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGTGATTTGTTGTTTGAATTTCAAATCTATTTTACACGGATCCAAGTATTTTCCTTTTTCATTTGATTGTTTTTACCCAAGAAATTAG 462 0.3658 VSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALITLATGPFIVAAGGVSNIFLHRLAENIQDAYAEAASIAEQVICCLNFKSILHGSKYFPFSFDCFYPRN 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38721g00001 153 Coils Coil 105 125 - -
Trme38721g00001 153 SUPERFAMILY ABC transporter transmembrane region 3 127 IPR036640 GO:0005524|GO:0016020
Trme38721g00001 153 PANTHER ABC TRANSPORTER B FAMILY 1 127 IPR039421 -
Trme38721g00001 153 Gene3D ABC transporter type 1, transmembrane domain 1 132 IPR036640 GO:0005524|GO:0016020
Trme38721g00001 153 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 3 127 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme38721g00001 153 Pfam ABC transporter transmembrane region 2 127 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38721g00001 Trme-Chr38721 473 1056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38721g00001 2 128 Calmodulin-binding Proteins AT2G36910 25.000 1.24e-07 48.1