Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38717g00001 ATGGAAGGAAATTATTTCAATAGAAACACAACAACTACTCATAGAGATCATCATCATCATCATAACTCGGGATTTGAGGAGCATACATGGGGAACATCATGGCCAGCAAGAAACTATGCTTGTAGTTTTTGCAAAAGAGAGTTTAGGTCAGCTCAAGCATTAGGTGGACATATGAATGTTCATAGAAGAGATAGGGCAAGATTAAGATCATCATTAATATCTTCTTGGGTTAATTCTGATCAATGCCCTAATACTAATANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNCTTCTACACAATCTCCTTTATCTAATGATGAGATTTTCAATGTTTCAAACCCTTATCTCACTTTATCATCTTCTTCTTCTTCACCTTTCTTAGCTCATACTAGCCATGATGATAAGAAACCAAGACTCACACCTTCTCTATCTCTTCCTCTTTTGAATCCTCAAAGAAGTCAAATTATGAAAAGCTATGAAGAGATGAAGAAGCATAATGTTTTGATGAATAATGAGCAAAACATTACATTGGAGTTAGGAATAGGGTTGCTTGAACATCAAGAGGAAAAGTTAGATTTGGAGCTTAGACTCTAG 621 0.3188 MEGNYFNRNTTTTHRDHHHHHNSGFEEHTWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLISSWVNSDQCPNTNXXXXXXXXXXXXXXXXXXXXSTQSPLSNDEIFNVSNPYLTLSSSSSSPFLAHTSHDDKKPRLTPSLSLPLLNPQRSQIMKSYEEMKKHNVLMNNEQNITLELGIGLLEHQEEKLDLELRL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38717g00001 206 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Trme38717g00001 206 Pfam C2H2-type zinc finger 39 63 - -
Trme38717g00001 206 MobiDBLite consensus disorder prediction 1 27 - -
Trme38717g00001 206 Gene3D Classic Zinc Finger 8 86 - -
Trme38717g00001 206 SMART c2h2final6 39 61 IPR013087 -
Trme38717g00001 206 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Trme38717g00001 206 PANTHER OS07G0101800 PROTEIN 20 206 - -
Trme38717g00001 206 SUPERFAMILY beta-beta-alpha zinc fingers 36 65 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38717g00001 Trme-Chr38717 1 621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38717g00001 27 69 C2H2 Transcription Factor Family AT3G23130 81.395 3.76e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38717g00001 - - tpra:123890230 303.523