Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3870g00001 ATGGACTCGGTATACTCAACAGATGTAGTTGGAACATTAGGGTATATGGCACCAGAATATGCAGAATCTGGTAAAGTGTCAACCAAGTCAGATGTGTATTCTTTTGGGGTGGTGCTTCTTCAGTTAATAACAGGAATGAGGACAACAGACAAAAGGATTGGAAACAAAAGTCTTGTGGGATGGGCTAGGCCACTACTGAAGGAAAGGAATTATCCAGATCTAATTGATGAAAGGATGATGGATACCTATGATTGTCATCAGCTTTTTTGGATGATTCGTCTAGCAGAAAAATGTCTCACTAGGGATCCTCAGAAGCGATTATCAATGGATACA 333 0.4024 MDSVYSTDVVGTLGYMAPEYAESGKVSTKSDVYSFGVVLLQLITGMRTTDKRIGNKSLVGWARPLLKERNYPDLIDERMMDTYDCHQLFWMIRLAEKCLTRDPQKRLSMDT 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3870g00001 111 Gene3D Transferase(Phosphotransferase) domain 1 1 111 - -
Trme3870g00001 111 SUPERFAMILY Protein kinase-like (PK-like) 4 110 IPR011009 -
Trme3870g00001 111 PANTHER OS01G0253100 PROTEIN 8 110 - -
Trme3870g00001 111 Pfam Protein kinase domain 7 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3870g00001 111 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3870g00001 Trme-Chr3870 86 834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3870g00001 6 109 Trihelix Transcription Factor Family AT1G70460 47.273 8.39e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trme3870g00001 Pkinase 4.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3870g00001 - - lsv:128129542 225.328