Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme386g00001 ATGTCGTCGTCATCATCATCCTCCACTTCTCAATGGATCTACGACGTGTTCCTCAGCTTCAGAGGGGAAGACACTCGTCTTAACTTTGTTGCTCATCTCCACAAAGCTCTCAAAACAGCCGGAATCAAAACTTTCATCGACAATCAGCTTAACAAAGGGACGGAGCTGGGACCAGAACTATTGAGAGCAATACAAGGTTCTCGTTTTTCCATCGTTGTCTTTTCCGAAACCTACACTGAATCTAGTTGGTGTCTCAAAGAGCTTGAACACATCATGAAATGCTGCAGAGATTATGGTCAGGTGGTTGTGCCCATATTTTACCACGTTGACTCATCGGATGTGCGTAATGAGATGGGTGCTTATAGAAAAGCTTTGCAAGAAACGGTTAAAAGAAGATCCTCAGGAGAAGAAAGGATGAGAAATGTATTCTCCAAGTGGACGAGTGCACTAACTGAAGTTGCAAATGTATCTGGCTGGGTTATCAACGATTTCAGCAATGAAGGTGAGCTAATGCCTCAAATTGTTAACGACCTTTTGAGAAAGCTGAAAAGCAGATTGTTGAAAATTACCGAATATCCGGTTGGATTAGATACTCGTGTGCAACAAGTGATTCAGTTTATTGAAAATCAATCCAGAAAAGTTTGCTTGATAGGGATCTGGGGGATGGGAGGATCGGGTAAAACAACAACAGCCAGAGCTATCTACAACAAAATTAATTTACAACAGAAATTTGTGAATCTCAGTTTCATTGAGAATATTGGAGAAGTTTGTAAAAATGGTGAAGAGATTATTCATTTACAAGAACAACTTCTTTCAGATATCTTAAAAACAAGTGAGAAGATATATGACCCTGCGTCCGGGATAACTACAATTGAGAACAGATTTAATGGGAAAAAGGCACTCATTGTACTCGATGACGTGAGCACCTTTGAGCAAGTAGAAGCCCTATGTGGAAACCGTAAATATTTTGGTTGGGGAACGGTATTAATTGTTACATCCAGGGATGTACGCATACTTCAGTTACTTGAAGTTGACCATGTCTATAGAATAAACGAAATGGATAAAAACAAGTCCATTGAGCTTTTCAGTTGGCATGCTTTTAGACGGCCAAGTCCGGTTGAAGATTTCAGTAAACTCTCAGAAAGCATAGTTGATTACTGTGGAGGATTACCACTGGCTCTTAAAGTCATTGGATCTTCCTTACGTGAAAGGACAAAAAAAGAACACTGGAAATGTACACTATCAAAATTAATGAGAATTCCCAATAATATAGTGCAAAAGAAACTCAAACTAAGCTATGATGGTTTAGAGGATTATCACCAAAAGGATATATTTCTTGACATTTGTTGTTTCTTTATTGGGAAGGACAGAGCCTATGTTACAGATATACTAAATGGCTGTGGACTTTATGCTGATTCTGGAATAACTATCCTCATAGAGCAGAGCCTTCTAAAAGTTGAAAAGAATAACAAACTTGGAATGCATGGTTTGCTACGAGACATGGGAAGAGAAATTGTTCGTAAAAGATCAATTGAAGAGCCTGGGGAGCGTAGTCGATTGTGGTTTCATGAGGATGTACGTGATGTTTTGACTGAAAATAGTGGAACAAAAACTGTGAAAGGATTGGTTTTTAAGTCACAAAGCAACAGCAATGTTTCCTTCAAGGCTGATTCTTTCAAGGAGATGAAGAATTTGAAACTTTTACAACTTGGTCATGTTGATCTTACCGGAGGTTATGTGCACCTTTCTCAAAAACTGAGATGGCTCCATTGGCAGGGATTTACAGGCAACTTTATACCTGATGAATTTTATCAGGAAAATCTAGTTGTTTTTGAGTTAAAACACAGCAATATTAAACAAGTTCGAAGTGAAACCAAGTTGATGGAGAAGCTGAAAATTCTCAATCTCAGTCATTCCAAGTACTTGACAAGCACTCCTGACTTTTCAAAATTACCAAATCTAGAAAAGCTCATTATGAAGGACTGTCCACGCTTGTCTGAGGTACACCAGTCGATTGGGGATCTAAGGAATCTTCTTCTGATAAATTTTAAAGACTGTACAAGTCTTAGCTATCTCCCAGAGAACATCAATCAATTGAAGTCTTTGACAACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAAGTTGGAAGAAGGCATAGTGCAGATGGAATCGTTGACAACACTGGCCATAAATGGTACAGGTGTGAAAGAGGTGCGATATTCAGTGGTAAGATTGAAAAGCATCGGATATATATCTCTATGTGGATATGAAGGATTGCCACTTGATGTTTTTCATTCTGCCATTCGGTCTTGGATGTCACCAACAATGAATTTGTCCCTTAGTAACTTGGACTTTCTATCACCAATAGTTAGGAGCCTTCCACACCTCAGAACTGTTTGGATACAATGCCACTCAGAGAATCAACTAACTCAAGAATTAAAAATAATTTTTGATGATCAATTTGATATTAATTGTACTGAATCAGAAGCATTGCAAATCCCAAATGATTCCTTGAGTTCGCATTTGATTGGAATGAGAAGTTGCCACGCAGTCATGGATACTCTTGACAAGAGCAGATCACAGGGATTAACAACCAATGATTTGAGCAATTTTTTCCTTCCGGGTAGCAATCATCCTTCTTGCTTAGCCTATGCAGGTGTAGGACCTTCAGCACCATTTCAAGTTCCTAAGGATATTGATTGTCGCATGGAGGGAA 2719 0.388 MSSSSSSSTSQWIYDVFLSFRGEDTRLNFVAHLHKALKTAGIKTFIDNQLNKGTELGPELLRAIQGSRFSIVVFSETYTESSWCLKELEHIMKCCRDYGQVVVPIFYHVDSSDVRNEMGAYRKALQETVKRRSSGEERMRNVFSKWTSALTEVANVSGWVINDFSNEGELMPQIVNDLLRKLKSRLLKITEYPVGLDTRVQQVIQFIENQSRKVCLIGIWGMGGSGKTTTARAIYNKINLQQKFVNLSFIENIGEVCKNGEEIIHLQEQLLSDILKTSEKIYDPASGITTIENRFNGKKALIVLDDVSTFEQVEALCGNRKYFGWGTVLIVTSRDVRILQLLEVDHVYRINEMDKNKSIELFSWHAFRRPSPVEDFSKLSESIVDYCGGLPLALKVIGSSLRERTKKEHWKCTLSKLMRIPNNIVQKKLKLSYDGLEDYHQKDIFLDICCFFIGKDRAYVTDILNGCGLYADSGITILIEQSLLKVEKNNKLGMHGLLRDMGREIVRKRSIEEPGERSRLWFHEDVRDVLTENSGTKTVKGLVFKSQSNSNVSFKADSFKEMKNLKLLQLGHVDLTGGYVHLSQKLRWLHWQGFTGNFIPDEFYQENLVVFELKHSNIKQVRSETKLMEKLKILNLSHSKYLTSTPDFSKLPNLEKLIMKDCPRLSEVHQSIGDLRNLLLINFKDCTSLSYLPENINQLKSLTTLILSGCSKIDKLEEGIVQMESLTTLAINGTGVKEVRYSVVRLKSIGYISLCGYEGLPLDVFHSAIRSWMSPTMNLSLSNLDFLSPIVRSLPHLRTVWIQCHSENQLTQELKIIFDDQFDINCTESEALQIPNDSLSSHLIGMRSCHAVMDTLDKSRSQGLTTNDLSNFFLPGSNHPSCLAYAGVGPSAPFQVPKDIDCRMEG 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme386g00001 906 PRINTS Disease resistance protein signature 294 308 - -
Trme386g00001 906 PRINTS Disease resistance protein signature 387 401 - -
Trme386g00001 906 PRINTS Disease resistance protein signature 216 231 - -
Trme386g00001 906 PRINTS Disease resistance protein signature 697 713 - -
Trme386g00001 906 Gene3D Ribonuclease Inhibitor 486 842 IPR032675 -
Trme386g00001 906 SMART till_3 13 156 IPR000157 GO:0007165
Trme386g00001 906 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 740 IPR044974 GO:0006952
Trme386g00001 906 Pfam TIR domain 14 185 IPR000157 GO:0007165
Trme386g00001 906 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 184 - -
Trme386g00001 906 Gene3D - 352 437 IPR042197 -
Trme386g00001 906 SUPERFAMILY L domain-like 548 839 - -
Trme386g00001 906 Pfam NB-ARC domain 198 433 IPR002182 GO:0043531
Trme386g00001 906 SUPERFAMILY "Winged helix" DNA-binding domain 425 530 IPR036390 -
Trme386g00001 906 Gene3D - 11 183 IPR035897 -
Trme386g00001 906 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 159 IPR035897 -
Trme386g00001 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Trme386g00001 906 Gene3D - 184 347 IPR027417 -
Trme386g00001 906 ProSiteProfiles TIR domain profile. 12 182 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme386g00001 Trme-Chr386 1 3806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme386g00001 14 746 WRKY Transcription Factor Family AT4G12020 32.271 9.64e-84 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme386g00001 - - tpra:123923845 1287.71