Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38695g00001 ATGAGCTTAATTGATCATCGTAACGTTGTTAARTCGTATTGTTCKTTCGTTGTGGATCGTAAACTTTGGGTGATTATGCCTTTTATGGCTCAGGGTTCTTGTTTRCATCTAATGAAAACTGCTTATCCTGATGGATTTGAAGAAGATGCTATTGGATCGATTCTGAAAGAAACTCTTAAAGCTTTGGATTATTTACATCAACATGGTCACATTCATCGTGATGTTAAAGCTGGTAATATTTTGCTTGATTCTAATGGTGAAGTCAAACTATCTGACTTTGGTGTTTCTGCTTCTATGTTTGATACTGGTGATCGTCAGCGTTCTAGAAATACTTTTGTTGGTACTCCTTGCTGGATGGCGCCGGAGGTGCTGCAACCTGGTACTGGTTATAATTTCAAGGCTGATATTTGGTCTTTTGGAATTACTGCACTTGAGTTGGCTCATGGTCATGCGCCGTTTTCTAAGTATCCTCCAATGAAGGTTTTACTCATGACCATACAAAATGCACCTCCTGGCCTTGATTACGATCGTGATAGAAAGTTCTCGAAG 549 0.3916 MSLIDHRNVVKSYCSFVVDRKLWVIMPFMAQGSCLHLMKTAYPDGFEEDAIGSILKETLKALDYLHQHGHIHRDVKAGNILLDSNGEVKLSDFGVSASMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDRKFSK 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38695g00001 183 ProSiteProfiles Protein kinase domain profile. 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38695g00001 183 Gene3D Phosphorylase Kinase; domain 1 1 31 - -
Trme38695g00001 183 SMART serkin_6 1 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38695g00001 183 Pfam Protein kinase domain 3 155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme38695g00001 183 SUPERFAMILY Protein kinase-like (PK-like) 1 168 IPR011009 -
Trme38695g00001 183 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 183 IPR047173 GO:0043539
Trme38695g00001 183 Gene3D Transferase(Phosphotransferase) domain 1 32 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38695g00001 Trme-Chr38695 127 955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38695g00001 1 183 MAP Kinase Kinase Kinase Kinase AT4G10730 86.339 6.32e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Trme38695g00001 Pkinase 1.1e-40 CL0016