Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38661g00001 AATATACCTTATCAATTTTCGATGGCACATCTTCCAAACTGCAACATAAAGATTATTCTTCATAATTTGAAGGGAGAACATTGGACTGTTAATTCTGTTACTAGAACTAGAGTACATACAAATCACACTCTATGTGGAGGATGGTTGGATTTTGTTCGTGACAATGGCATAAAGGTTGGAGATGTCTGCATTTTCGAACTTATACGTGAGTGTGAATTACGTGTTCATATCGCTGAGGTTGGAAAAGATGGGCTAGACTCCCAGATTGAAAAACTAGCTTCTAGTATGCATAGTGCAAGACATGATGTTGCTTGCCGTAAGACTTCCAGATATATGCCAAAGAATCCTAAAGTCAGCTCAATGTGCAGAAACAAAGTTGATCTATCAAATAAAAAGTCGTCAAAGATTGGTCAAGGAGCTGCTTTATCCATCTTAAAGAAATACGGTAGAGCTTCAAATGCTTCGAAGAAGATGGGGATTTGCCCCAAGTCGAAAGCAGTCCATAAAAAGTTGG 514 0.3833 NIPYQFSMAHLPNCNIKIILHNLKGEHWTVNSVTRTRVHTNHTLCGGWLDFVRDNGIKVGDVCIFELIRECELRVHIAEVGKDGLDSQIEKLASSMHSARHDVACRKTSRYMPKNPKVSSMCRNKVDLSNKKSSKIGQGAALSILKKYGRASNASKKMGICPKSKAVHKKL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38661g00001 171 SUPERFAMILY DNA-binding pseudobarrel domain 2 79 IPR015300 -
Trme38661g00001 171 CDD B3_DNA 2 77 IPR003340 GO:0003677
Trme38661g00001 171 Gene3D - 1 81 IPR015300 -
Trme38661g00001 171 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 84 IPR044837 -
Trme38661g00001 171 ProSiteProfiles B3 DNA-binding domain profile. 1 81 IPR003340 GO:0003677
Trme38661g00001 171 SMART B3_2 2 81 IPR003340 GO:0003677
Trme38661g00001 171 Pfam B3 DNA binding domain 2 77 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38661g00001 Trme-Chr38661 195 708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38661g00001 2 79 B3 DNA Binding Superfamily AT5G18000 34.177 3.02e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme38661g00001 B3 3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38661g00001 - - tpra:123885939 325.479