Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38617g00001 ATGAGTGGAGTAGGAAAGTCAACCATAGCCATACAGATGTTTGCCAAAAACTTTGCTCAATATGATAATGTATGCTTCTTGGAAAATGTAAGCGAACAATCAGAAAAATCAGGAATAACAAACGTTCGCAATAAGCTTCTTAGTGAGCTACTGAAGCAAGAAATTACTGCATCTGATGTTCATGGACTGCCCACATTCATCAGGAGGAGGCTTAGCTGTAAAAAGAGTTTCATTGTACTTGATGATGTTGACAGTGCTACACAATTAGATTATCTGTGTGGAGAACTTGATGACCTTGGACCTAACATTAGACTCATTATCACAACGAGAGACAGGCATACGCTTAGTGGAAAAGTTGACGAGATTTATGAGGTCACACCATGGAAGATTAAAGACTCTCTAAAGCTTTTTAGCTTAAGAGCCTTCAAGCAAGACCATCCTTTAAAGGGTTACGAGTGTGTCTCGGAAAGGGCACTTGAATGTGCAGGAGGTGTTCCATTAGCTTTAGAAGTTTTGGGTTCACATTTTCATGCCAGAAAACTAAAATTTTGGGAATCTGAGTTGAATTTGTATGAGAACAAAGAGGAAGCGTTCCCCGATATTCAAAAAGTGCTAATGGTAAGCTACAATGGATTATCATGGCGAGAGAAGGAAATGTTTCTAGACATTGCATTCTTTTTCAAAGATGAAAACAAAGACTTCGTCACAAGGACCCTAGATGCCTTTGGTTTCAATGCAATTAGTGGAGTAGAAATTCTAGAAGATAAAGCTCTTATATCCATTTCAAACAGCAATAAGATACAGATGCATGGCTTACTACAAAAGATGGCCTTTGATATAGTTCGACAACAACATATTAAAGACCCCGGAAAGCGCAGCCGACTGAGGGATGCTAAAGACATTTATGATGTACTTGGAAACAACAAGGTATATATGGATTGTTAA 945 0.3841 MSGVGKSTIAIQMFAKNFAQYDNVCFLENVSEQSEKSGITNVRNKLLSELLKQEITASDVHGLPTFIRRRLSCKKSFIVLDDVDSATQLDYLCGELDDLGPNIRLIITTRDRHTLSGKVDEIYEVTPWKIKDSLKLFSLRAFKQDHPLKGYECVSERALECAGGVPLALEVLGSHFHARKLKFWESELNLYENKEEAFPDIQKVLMVSYNGLSWREKEMFLDIAFFFKDENKDFVTRTLDAFGFNAISGVEILEDKALISISNSNKIQMHGLLQKMAFDIVRQQHIKDPGKRSRLRDAKDIYDVLGNNKVYMDC 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38617g00001 314 PRINTS Disease resistance protein signature 70 84 - -
Trme38617g00001 314 PRINTS Disease resistance protein signature 162 176 - -
Trme38617g00001 314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 223 IPR027417 -
Trme38617g00001 314 Gene3D - 129 213 IPR042197 -
Trme38617g00001 314 Gene3D - 1 122 IPR027417 -
Trme38617g00001 314 SUPERFAMILY "Winged helix" DNA-binding domain 200 304 IPR036390 -
Trme38617g00001 314 Pfam NB-ARC domain 1 189 IPR002182 GO:0043531
Trme38617g00001 314 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 305 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38617g00001 Trme-Chr38617 41 985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38617g00001 1 301 WRKY Transcription Factor Family AT5G45050 32.781 2.09e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38617g00001 - - psat:127076353 502.286