Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38606g00001 ATGCTTCCCCTTAGGAGACCAGATTTATTCAAAGGTGGTGGAGTTTTGAAGCCATGTAAAGGTGTATTGCTTTTTGGACCTCCCGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAAAGAAGCTGGAGCAAGTTTCATCAATGTATCTGCATCCACCATCACTGACGTGTGGTTCGGACACTCTGAAAAGAACGTCCGAGCTTTGTTTTCACTAGCGGCAAAGGTTGCCCCAACTGTTATTTTCGTTGATGAAATTGATAGCATNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAGAAGCATTAAAAATGAATTCATGTCCCATTGGGATGGACTATTGTCAAAACCTGATGAGAGAATTATTGTTCTTGGTGCCACCAATATGCCATTTGACCTTGATGAAGCAGTTATAAGGCGGTTCCAGCGCAGGATCATGGTTGGTCTTCCGTCTGCTGAGAACAGGGAAATGATCTTGAAAACTATCTTANNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCTCTCAACTATGACAGAAGGATATAGTGGAAGTGATCTTAAGAATCTGTACACGACTGCAGCTTATCGCCCCGTTAAGGAGCTACTGCAACAGGAGAAGGATAATCAAGTGATTCCCCTCAGGCCTTTAAACATGGAAGACATGAGACAGGCAAAGAATAAG 699 0.382 MLPLRRPDLFKGGGVLKPCKGVLLFGPPGTGKTMLAKAIAKEAGASFINVSASTITDVWFGHSEKNVRALFSLAAKVAPTVIFVDEIDSXXXXXXXXXXXXXXRSIKNEFMSHWDGLLSKPDERIIVLGATNMPFDLDEAVIRRFQRRIMVGLPSAENREMILKTILXXXXXXXXXXXXLSTMTEGYSGSDLKNLYTTAAYRPVKELLQQEKDNQVIPLRPLNMEDMRQAKNK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38606g00001 233 Gene3D - 2 153 IPR027417 -
Trme38606g00001 233 Gene3D - 154 232 - -
Trme38606g00001 233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 208 IPR027417 -
Trme38606g00001 233 ProSitePatterns AAA-protein family signature. 125 144 IPR003960 GO:0005524|GO:0016887
Trme38606g00001 233 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 233 - -
Trme38606g00001 233 SMART AAA_5 18 155 IPR003593 GO:0016887
Trme38606g00001 233 Pfam ATPase family associated with various cellular activities (AAA) 22 152 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38606g00001 Trme-Chr38606 17 925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38606g00001 16 219 Calmodulin-binding Proteins AT3G56690 32.692 2.88e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38606g00001 - - tpra:123913080 358.992