Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38582g00001 ATGGCTACTTTTGTTTCTGGTTTTATTGTTGGATTCACTGCTGTTTGGCAATTGGCTTTAGTTACCCTTGCTGTTGTTCCTATGATAGCTGTTATTGGAGCCATTCACACCACTACTTTGGCTAAGCTCTCTAGTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACGGTTGTGCAAATCCGTGTAGTGTTGGCTTTCGTTGGTGAGTCCCGAGCACTACAAGGCTACTCATCAGCCTTGAAGGTTGCTCAGAAGCTTGGCTACAAAACAGGATTAGCAAAGGGAATGGGATTAGGTGCAACTTACTTTGTTGTTTTCTGCTGCTACGCGCTTCTGTTGTGGTATGGAGGCTATCTTGTAAGGCATCACGAGACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTCATGATTGGTGGAATAGGTTTGGGGCAATCTGCACCTAGCATGGCTGCATTTACAAAGGCGAGGGTTGCTGCGGCTAAGATTTTCCGGATAATCGATCACAATCCTGGCCCGAGGTTCTGA 546 0.4634 MATFVSGFIVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSSKSQEALSQAGNIVEQTVVQIRVVLAFVGESRALQGYSSALKVAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHETNGGLAIATMFAVMIGGIGLGQSAPSMAAFTKARVAAAKIFRIIDHNPGPRF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38582g00001 181 Gene3D ABC transporter type 1, transmembrane domain 1 179 IPR036640 GO:0005524|GO:0016020
Trme38582g00001 181 Pfam ABC transporter transmembrane region 1 145 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme38582g00001 181 SUPERFAMILY ABC transporter transmembrane region 2 177 IPR036640 GO:0005524|GO:0016020
Trme38582g00001 181 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 169 - -
Trme38582g00001 181 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 161 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme38582g00001 181 PANTHER ABC TRANSPORTER B FAMILY 1 177 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38582g00001 Trme-Chr38582 68 1033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38582g00001 1 177 Calmodulin-binding Proteins AT2G36910 91.525 1.48e-99 310