Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme385810g00001 GGACGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACCGATAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGCGTCTCTTTGGCAGGTCCAGATGGTCGAGTATTGGGTGGTGGACTCGCTGGTTTGCTTATAGCTTCTGGTCCTGTGCAGGTAAACTCCA 172 0.4884 GRFEILSLSGSFMPTDNGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVNS 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme385810g00001 57 Gene3D - 1 56 - -
Trme385810g00001 57 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 55 IPR039605 GO:0003680
Trme385810g00001 57 Pfam Plants and Prokaryotes Conserved (PCC) domain 1 55 IPR005175 -
Trme385810g00001 57 ProSiteProfiles PPC domain profile profile. 1 57 IPR005175 -
Trme385810g00001 57 SUPERFAMILY AF0104/ALDC/Ptd012-like 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme385810g00001 Trme-Chr385810 140 311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme385810g00001 1 55 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 83.636 2.71e-25 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme385810g00001 - - gmx:100776862 83.1889