Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38560g00001 ATGTTTGGTGGAACTGAGACAGTAGCATCAGTGATAGAATGGGCATTGGCAGAACTCATGAAAAGCCCAAAAGATCTTCAAAAAGTTCAACAAGAGCTCACCGACGTTATAGGTTTAGATCGGAGATTCAACGAAACCGATCTAGAAAAATTGACTTATCTCAAATGCATCATCAAAGAAACATTGCGACTCCACCCTCCAATTCCCTTACTCCTCCATGAGACAGCGGAAGATACTAATATCGCAGGTTATTTTGTCCCAAAATCAACACGTGTTTGGATAAACGCGTGGGCAATTGGACGCGACAAAAGCGCGTGGGAAGAGCCAGAGAAATTTAACCCATCGCGATTCTTGAACCACGGTATGCCGGATTTCAAAGGAAGTAACTTCGAATTCATTCCATTTGGATCAGGAAGAAGATCATGTCCAGGAATGCAACTTGGACTTTATGCTGTGGAAATGACCATAGCTAATGTGCTTCATTGTTTCAAATGGGAGTTACCTAATGGAATGAAACCAAGTGAGCTTGATATGAATGATGTGTTTGGTCTCACTGCTCCTAGAGCTGTTCAGCTTGTTGCG 582 0.4261 MFGGTETVASVIEWALAELMKSPKDLQKVQQELTDVIGLDRRFNETDLEKLTYLKCIIKETLRLHPPIPLLLHETAEDTNIAGYFVPKSTRVWINAWAIGRDKSAWEEPEKFNPSRFLNHGMPDFKGSNFEFIPFGSGRRSCPGMQLGLYAVEMTIANVLHCFKWELPNGMKPSELDMNDVFGLTAPRAVQLVA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38560g00001 194 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 135 144 IPR017972 GO:0005506|GO:0016705
Trme38560g00001 194 Gene3D Cytochrome P450 1 191 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme38560g00001 194 PRINTS E-class P450 group I signature 55 73 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme38560g00001 194 PRINTS E-class P450 group I signature 12 38 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme38560g00001 194 PRINTS E-class P450 group I signature 132 142 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme38560g00001 194 PRINTS E-class P450 group I signature 95 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme38560g00001 194 PRINTS E-class P450 group I signature 142 165 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme38560g00001 194 PANTHER CYTOCHROME P450 84A1-RELATED 1 194 - -
Trme38560g00001 194 FunFam Predicted protein 1 194 - -
Trme38560g00001 194 SUPERFAMILY Cytochrome P450 1 187 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme38560g00001 194 Pfam Cytochrome P450 1 187 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme38560g00001 194 PRINTS P450 superfamily signature 142 153 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme38560g00001 194 PRINTS P450 superfamily signature 133 142 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme38560g00001 194 PRINTS P450 superfamily signature 56 67 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme38560g00001 194 PRINTS P450 superfamily signature 3 20 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38560g00001 Trme-Chr38560 182 867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38560g00001 1 194 Monolignol Biosynthesis Gene Families AT4G36220 74.227 1.36e-111 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38560g00001 K09755 - cpap:110822357 326.25