Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38546g00001 ATGGTTCCTACTATAGGGGGAAAGCCACTAGATCTACATCACCTTTTCGTTGAAGTAACATCTCGTGGTGGTATAGAAAAGGTGATTGTAGATCGTAAATGGAAGGAAGTAGTTATGTCCTTCAAGTTCCGAGAGACCATAACAAGCGCATCATTCATGGTGCGCAAGTACTATCTATCGTTGCTGTATCACTTTGAGCAAGCGTATTATCTTTGCAAGCAAGTCCCTCCCTCAACACCTGATGCTTTGAGTGGGAACCTTGCCAATAGCTCCACAACCAATAGAGAGGGTGCTGCTATCAATGATTCACCTGTTCAGGGTAAGTCAATGAATCATTAA 339 0.4307 MVPTIGGKPLDLHHLFVEVTSRGGIEKVIVDRKWKEVVMSFKFRETITSASFMVRKYYLSLLYHFEQAYYLCKQVPPSTPDALSGNLANSSTTNREGAAINDSPVQGKSMNH 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38546g00001 112 SMART bright_3 1 71 IPR001606 GO:0003677
Trme38546g00001 112 MobiDBLite consensus disorder prediction 78 112 - -
Trme38546g00001 112 Gene3D - 1 82 IPR036431 GO:0003677
Trme38546g00001 112 ProSiteProfiles ARID domain profile. 1 70 IPR001606 GO:0003677
Trme38546g00001 112 SUPERFAMILY ARID-like 2 77 IPR036431 GO:0003677
Trme38546g00001 112 MobiDBLite consensus disorder prediction 79 112 - -
Trme38546g00001 112 SMART ARID_2 1 66 - -
Trme38546g00001 112 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 90 - -
Trme38546g00001 112 Pfam ARID/BRIGHT DNA binding domain 2 66 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38546g00001 Trme-Chr38546 288 882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38546g00001 2 97 ARID Transcription Factor Family AT3G13350 60.204 1.10e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trme38546g00001 ARID 6.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38546g00001 - - mtr:11414168 197.208