Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38532g00001 ATGCCTATATATAATCTTCCTGACACAATTTCAATGATTGCACAAACCAAAGTTTCTCTAGATAGGATTGTCGCGTTTCTTCGTCTGGATGATTTGCAAACTGATGTAGTGGAGAAGCTTCCGCGAGGTAGTTCTGATATAGCAATTGAAATAGAAAGTGGAAATTTCACTTGGGATTTATCTTCTGTCAATACAACGCTGAAAAACATAAATCTTAGAGTTTTTCATGGTATGAGAGTTGCTGTTTGTGGTACTGTTGGATCAGGAAAGTCTAGTTTACTTTCTTGTATAATAGGGGAAATACCAAAGTTATCTGGAACCTTGAAGGCATGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATACAGAGTGGGAAGATAGAAGAGAATATATTATTTGGTAGAGAAATGAATAGGGAAAAGTATGAGAGGGTGCTAGAAGCNNNTNNNNNNNNNNTNNNNNNNNNNGTTTTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAACAAAGAGTACAAATAGCTCGTGCTCTTTACCAAGATGCCGATATATATCTTCTAGACGATCCCTTTAGTGCTGTTGATGCTCATACAGGGTCCCATCTCTTTAAG 642 0.3676 MPIYNLPDTISMIAQTKVSLDRIVAFLRLDDLQTDVVEKLPRGSSDIAIEIESGNFTWDLSSVNTTLKNINLRVFHGMRVAVCGTVGSGKSSLLSCIIGEIPKLSGTLKACGTKAYVAQSPWIQSGKIEENILFGREMNREKYERVLEAXXXXXXXXVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFK 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38532g00001 214 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 214 - -
Trme38532g00001 214 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 214 IPR003439 GO:0005524
Trme38532g00001 214 Gene3D - 22 214 IPR027417 -
Trme38532g00001 214 Pfam ABC transporter 67 201 IPR003439 GO:0005524
Trme38532g00001 214 FunFam Uncharacterized protein 24 177 - -
Trme38532g00001 214 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524|GO:0016887
Trme38532g00001 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 213 IPR027417 -
Trme38532g00001 214 CDD ABCC_MRP_domain1 49 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38532g00001 Trme-Chr38532 340 981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38532g00001 30 208 Calmodulin-binding Proteins AT2G36910 33.846 6.02e-19 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38532g00001 - K05666 gmx:100795627 367.081