Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38517g00001 ATGGATGATCAGCTTCTTGATGCGATATGTGAGCGGCTGGTATCTTCTCTAAGCACTCTAGGCACCTACATTGTTCGTGAGGGTGACCCTGTAACTGAAATGCTGTTTATCATTAGAGGCAGATTAGACAGTTCTACGACAAATGGTGGTCGGACTGGTTTTTTCAACTCAATCATATTGAGACCTGGAGATTTTTGCGGTGAGGAACTTCTTTCTTGGGCACTACTCCCAAAATCAACCATGAATTTGCCGTCTTCAACTAGGACAGTTAAAGCCCTAAGTGAGGTTGAAGCTTTTGCTCTTCGAGCTGAAGATCTAAAGTTCGTCGCAAATCAATTTAGGCGCCTTCACAGCAAAAAGCTGCAGCACACCTTTCGATTTTACTCTCATCATTGGAGGACTTGGGCCGCTTGTTTTATACAGGCTGCTTGGCGTCGATATAAGAAAAGGATGTCTGCCAAAGATCTTGGTTTGAGGGAATCCCTTCCTTTAGATGAGACAGTGGCCAGTGAGAGATTACAAGAGGAGGAATATCCTATAGGTTCAAACTCATCGCAGGCTAAATTGAACCTTGGGGTCACAATTCTTGCTTCAAGGTTTGCTGCTAACACACGAAGAGGAGCTCTAAAGATGAAAGACGACCTGCCTAAGCTTCGAAAGCCAGAAGAGCCCGACTTCTCCAATGAAGCAGATGATGATTAG 702 0.4459 MDDQLLDAICERLVSSLSTLGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTMNLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMSAKDLGLRESLPLDETVASERLQEEEYPIGSNSSQAKLNLGVTILASRFAANTRRGALKMKDDLPKLRKPEEPDFSNEADDD 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38517g00001 233 CDD CAP_ED 1 128 IPR000595 -
Trme38517g00001 233 Gene3D Jelly Rolls 1 115 IPR014710 -
Trme38517g00001 233 SMART cnmp_10 1 128 IPR000595 -
Trme38517g00001 233 ProSiteProfiles cAMP/cGMP binding motif profile. 1 127 IPR000595 -
Trme38517g00001 233 MobiDBLite consensus disorder prediction 211 233 - -
Trme38517g00001 233 Pfam Cyclic nucleotide-binding domain 21 108 IPR000595 -
Trme38517g00001 233 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 226 - -
Trme38517g00001 233 MobiDBLite consensus disorder prediction 211 226 - -
Trme38517g00001 233 FunFam Cyclic nucleotide-gated ion channel 1 1 113 - -
Trme38517g00001 233 SUPERFAMILY cAMP-binding domain-like 1 115 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38517g00001 Trme-Chr38517 73 774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38517g00001 1 232 Ion Channels AT4G30360 76.271 2.50e-118 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38517g00001 K05391 - gmx:100810967 426.402