Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme384879g00001 GCTAAAGTTGCTGATTTTGGTCTAGCTAAACTAGCACCTGAAGGCAGAGCTAATTACCTGTCTACTCGAGTCATGGGAACATTTGGGTATGTAGCACCTGAGTATGCTATGACTGGACACCTACTCGTTAAAAGCGACGTTTATAGCTACGGGGTTGTCTTGCTAGAACTGTTGACCGGAAGGAAACCTGTGGATATGTCACAGCCAACTGGACAGGAGAACCTTGTG 228 0.4649 AKVADFGLAKLAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLV 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme384879g00001 76 Pfam Protein kinase domain 2 69 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme384879g00001 76 ProSiteProfiles Protein kinase domain profile. 1 76 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme384879g00001 76 Gene3D Transferase(Phosphotransferase) domain 1 1 76 - -
Trme384879g00001 76 PANTHER OS01G0750732 PROTEIN 1 76 - -
Trme384879g00001 76 SUPERFAMILY Protein kinase-like (PK-like) 1 69 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme384879g00001 Trme-Chr384879 1 311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme384879g00001 1 76 Receptor kinase-like Gene Family AT4G02010 94.737 1.75e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trme384879g00001 Pkinase 2.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme384879g00001 - - msin:131230414 151.754