Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38469g00001 TTCATATCCACTATGATGTCTAAAATGTCAAGTCGCGGACAAGTTGCTTATGCAGAAGCAGGAAATGTTGTTGATCAAACAGTTGGAGCCATCAGAACAGTTGCATCTTTTACCGGTGAGAAAAAAGCCATAGAGAAGTATAATAGCAAAATTAAAGTTGCTTATACTACAATGGTTCAACAAGGGATAATATCAGGGTTAGGAATGGGAACGCTTCTCCTTATTATCTTCTGCACTTATGGACTTGCCATGTGGTATGGTTCCAAACTAGTCATCGAGAAAGAATATAACGGTGGAACGGTCATGACTGTGATCATGTCTCTTATGACTGGTGGAGTATCACTAGGTCAGACATCCCCAAGCTTAAATGCATTTGCTGCAGGCCAAGCAGCAGCATATAAAATGTTTGAGACCATTAAAAGAAAGCCGAAAATTGATGCCTATGATACCAGTGGCACTGTCTTGGAAGACATAAAGGGAGATATTGAACTTAAAGATGTTTACTTCAGATATCCTGCAAGGCCAGATGTTCAGATATTTGCTGGATTCTCATTGTTTGTTCCGAGTGGCACAACTACTGCTTTGGTCGGTCAAAGTGGAAGCGGAAAGTCCACTGTGATCAGTCTATTGGAAAGATTCTATGACCCTGATGCTGGAGAAGTACTTATAGACGGTGTGAATTTGAAGA 688 0.407 FISTMMSKMSSRGQVAYAEAGNVVDQTVGAIRTVASFTGEKKAIEKYNSKIKVAYTTMVQQGIISGLGMGTLLLIIFCTYGLAMWYGSKLVIEKEYNGGTVMTVIMSLMTGGVSLGQTSPSLNAFAAGQAAAYKMFETIKRKPKIDAYDTSGTVLEDIKGDIELKDVYFRYPARPDVQIFAGFSLFVPSGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38469g00001 229 Gene3D - 152 229 IPR027417 -
Trme38469g00001 229 Pfam ABC transporter 183 228 IPR003439 GO:0005524
Trme38469g00001 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 228 IPR027417 -
Trme38469g00001 229 PANTHER ABC TRANSPORTER B FAMILY 2 229 IPR039421 -
Trme38469g00001 229 SUPERFAMILY ABC transporter transmembrane region 2 146 IPR036640 GO:0005524|GO:0016020
Trme38469g00001 229 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 127 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme38469g00001 229 Pfam ABC transporter transmembrane region 2 112 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme38469g00001 229 Gene3D ABC transporter type 1, transmembrane domain 1 141 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38469g00001 Trme-Chr38469 183 1065 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38469g00001 3 229 Calmodulin-binding Proteins AT2G36910 47.137 4.04e-65 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38469g00001 K05658 - gmx:100801771 397.512