Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme384476g00001 ATGGTTGTACCTCCCTGTCTGTTGGATTTTACGAAGGATATGATTGCTAAGTCCGATGATAAAACCGTTCTGGCATCCTTCCTCTCGCGTGAAATAAAGGAGGACTCTCATTTGCTTGAGCTTTTCATGCCTATTGGTGATGTGAGCCGTGCCAAGCTTGCTATTGCTCCAACTGGCACTAGTGGGGGATATGGCTTTGTTACCTTTGTCACCAAGGAAGATGCTCAGAAGGCTATTGGCGAACTCAATGGGCGTGTGTATGGCTGGGACAAAC 274 0.4745 MVVPPCLLDFTKDMIAKSDDKTVLASFLSREIKEDSHLLELFMPIGDVSRAKLAIAPTGTSGGYGFVTFVTKEDAQKAIGELNGRVYGWDK 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme384476g00001 91 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 91 IPR000504 GO:0003723
Trme384476g00001 91 SMART rrm1_1 22 91 IPR000504 GO:0003723
Trme384476g00001 91 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 87 IPR000504 GO:0003723
Trme384476g00001 91 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 18 88 - -
Trme384476g00001 91 Gene3D - 21 89 IPR012677 -
Trme384476g00001 91 SUPERFAMILY RNA-binding domain, RBD 18 87 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme384476g00001 Trme-Chr384476 1 274 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme384476g00001 13 91 Eukaryotic Initiation Factors Gene Family AT3G11400 47.500 1.57e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme384476g00001 - - tpra:123898674 143.665