Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38442g00001 CCTCCTTCTAACTCTAAGGCATCTTCTTCTAAGAAGAAATCAAAAGATGCCGATGAGGATGGAAAGAAGAGAAAACCGAAGAAGAAAAAGGATCCAAATGCACCCAAGAGGGCATTGTCTGGATTCATGTTCTTTTCTCAAATGGAAAGAGAGAATATAAAGAAAACTAATCCTGGGATTTCATTTACGGATGTTGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGTTGAGGAGAAGGAGCCATATGAGGCAAAAGCCCGTGTTGATAAAATACGTTACAAGGATGAGATTAGTGGCTACAAGAATCAACAAGCACAACCACAGCCGATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA 372 0.3952 PPSNSKASSSKKKSKDADEDGKKRKPKKKKDPNAPKRALSGFMFFSQMERENIKKTNPGISFTDVGRVLGEKWKKMSVEEKEPYEAKARVDKIRYKDEISGYKNQQAQPQPMNIDSGNESDSA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38442g00001 123 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 35 103 IPR009071 -
Trme38442g00001 123 PANTHER HIGH MOBILITY GROUP PROTEIN DSP1 11 113 - -
Trme38442g00001 123 MobiDBLite consensus disorder prediction 99 123 - -
Trme38442g00001 123 MobiDBLite consensus disorder prediction 9 26 - -
Trme38442g00001 123 FunFam FACT complex subunit SSRP1 17 112 - -
Trme38442g00001 123 SUPERFAMILY HMG-box 22 105 IPR036910 -
Trme38442g00001 123 Pfam HMG (high mobility group) box 35 103 IPR009071 -
Trme38442g00001 123 Gene3D High mobility group box domain 4 115 IPR036910 -
Trme38442g00001 123 SMART hmgende2 34 104 IPR009071 -
Trme38442g00001 123 MobiDBLite consensus disorder prediction 101 123 - -
Trme38442g00001 123 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38442g00001 Trme-Chr38442 3 638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38442g00001 31 103 ARID Transcription Factor Family AT1G04880 38.356 1.47e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trme38442g00001 HMG_box 1.8e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38442g00001 K09272 - qsa:O6P43_004518 188.734