Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trme38442g00001 | CCTCCTTCTAACTCTAAGGCATCTTCTTCTAAGAAGAAATCAAAAGATGCCGATGAGGATGGAAAGAAGAGAAAACCGAAGAAGAAAAAGGATCCAAATGCACCCAAGAGGGCATTGTCTGGATTCATGTTCTTTTCTCAAATGGAAAGAGAGAATATAAAGAAAACTAATCCTGGGATTTCATTTACGGATGTTGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGTTGAGGAGAAGGAGCCATATGAGGCAAAAGCCCGTGTTGATAAAATACGTTACAAGGATGAGATTAGTGGCTACAAGAATCAACAAGCACAACCACAGCCGATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA | 372 | 0.3952 | PPSNSKASSSKKKSKDADEDGKKRKPKKKKDPNAPKRALSGFMFFSQMERENIKKTNPGISFTDVGRVLGEKWKKMSVEEKEPYEAKARVDKIRYKDEISGYKNQQAQPQPMNIDSGNESDSA | 123 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trme38442g00001 | 123 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 35 | 103 | IPR009071 | - | |
Trme38442g00001 | 123 | PANTHER | HIGH MOBILITY GROUP PROTEIN DSP1 | 11 | 113 | - | - | |
Trme38442g00001 | 123 | MobiDBLite | consensus disorder prediction | 99 | 123 | - | - | |
Trme38442g00001 | 123 | MobiDBLite | consensus disorder prediction | 9 | 26 | - | - | |
Trme38442g00001 | 123 | FunFam | FACT complex subunit SSRP1 | 17 | 112 | - | - | |
Trme38442g00001 | 123 | SUPERFAMILY | HMG-box | 22 | 105 | IPR036910 | - | |
Trme38442g00001 | 123 | Pfam | HMG (high mobility group) box | 35 | 103 | IPR009071 | - | |
Trme38442g00001 | 123 | Gene3D | High mobility group box domain | 4 | 115 | IPR036910 | - | |
Trme38442g00001 | 123 | SMART | hmgende2 | 34 | 104 | IPR009071 | - | |
Trme38442g00001 | 123 | MobiDBLite | consensus disorder prediction | 101 | 123 | - | - | |
Trme38442g00001 | 123 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trme38442g00001 | Trme-Chr38442 | 3 | 638 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trme38442g00001 | 31 | 103 | ARID Transcription Factor Family | AT1G04880 | 38.356 | 1.47e-09 | 52.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | HMG | Trme38442g00001 | HMG_box | 1.8e-22 | CL0114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trme38442g00001 | K09272 | - | qsa:O6P43_004518 | 188.734 |