LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme38438g00001	AAACACTTAGCAGAGCATTGTAGAGCTGAATATTCGCGAGTGTCCAACTTTATTCTTTGGATTATTGCTGAAATTGCCATAGTGGCCTGTGACATCCCAGAAGTGATCGGGACAGCATTTGCGTTAAATATGCTCTTCAACATACCTGTTTGGATTGGTGTGTTACTGACTGGACTCAGCACATTGATGCTCTTAGCATTACAACAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTCTTGTGTTTACAATTGCTGCGTGTTTTTGGGCTGAGCTTGGATATGCAAAGCCTGATGCTAAAGAAGTTGTGAAGGGTCTTTTTGTGCCACAACTAAAAGGGAGTGGTGCTACTGGCCTTGCAATTTCACTCCTCGGTGCTATGGTTATGCC	395	0.4253	KHLAEHCRAEYSRVSNFILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLMLLALQQYGVRKLEFLIAFLVFTIAACFWAELGYAKPDAKEVVKGLFVPQLKGSGATGLAISLLGAMVMP	132

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme38438g00001	132	NCBIfam	Nramp family divalent metal transporter	3	128	-	-
	Trme38438g00001	132	Pfam	Natural resistance-associated macrophage protein	1	132	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Trme38438g00001	132	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	1	132	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Trme38438g00001	132	PRINTS	Natural resistance-associated macrophage protein signature	19	45	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Trme38438g00001	132	PRINTS	Natural resistance-associated macrophage protein signature	72	93	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Trme38438g00001	132	PRINTS	Natural resistance-associated macrophage protein signature	122	132	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Trme38438g00001	132	PRINTS	Natural resistance-associated macrophage protein signature	47	66	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme38438g00001	Trme-Chr38438	122	1015	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme38438g00001	1	132	Inorganic Solute Cotransporters	AT1G15960	87.121	8.52e-80	242

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme38438g00001	K21398		-	gmx:100797298	233.032