Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme38431g00001 ATGCACAAGGAAATTCTTCAAAGTCCATGGCTTTGCGAACTTATGGCATTCCACATTAATTTAAGAGAAACCAAGGTCGAATCGAGGAAGGAAACTGCTTTGTTTGATAAATGTTGTCTCACATTTAAGGATGGAAAACCATCACTTACTTGTGACCTCTTTGATTCTATCAAAATTGATCTTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCCCTGACTTGCGGTCATATATTCTGTTACATTTGTGCTTGCTCGGCTGCATCAGTATCTATTGTCGATGGACTTAAGGCAGCAAATCCTAAAGAAAGATGTCCGCTATGCCGAGAG 345 0.3971 MHKEILQSPWLCELMAFHINLRETKVESRKETALFDKCCLTFKDGKPSLTCDLFDSIKIDLDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKAANPKERCPLCRE 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme38431g00001 115 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 115 IPR033326 -
Trme38431g00001 115 SUPERFAMILY RING/U-box 58 115 - -
Trme38431g00001 115 SMART ring_2 65 113 IPR001841 -
Trme38431g00001 115 Pfam Zinc finger, C3HC4 type (RING finger) 65 113 IPR018957 GO:0046872
Trme38431g00001 115 ProSiteProfiles Zinc finger RING-type profile. 65 114 IPR001841 -
Trme38431g00001 115 ProSitePatterns Zinc finger RING-type signature. 80 89 IPR017907 -
Trme38431g00001 115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 115 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme38431g00001 Trme-Chr38431 403 1005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme38431g00001 62 114 C3H Transcription Factor Family AT4G28270 39.655 3.50e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme38431g00001 K16275 - gmx:100797432 221.476